RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LNP1A1A4G5 178 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 MAGEB16A2A368 324 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CENPXA8MT69 81 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 KPNA3O00505 521 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TBX1O43435 398 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 DLX3O60479 287 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 PRAMEF11O60813 436 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 FKBP9O95302 570 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 PEX11BO96011 259 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ADH1BP00325 375 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 IGHV4-34P06331 123 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 F7P08709 466 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SPNP16150 400 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NFKB1P19838 968 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 M6PRP20645 277 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 HADHAP40939 763 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ADPRHP54922 357 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TAS2R38P59533 333 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RACK1P63244 317 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 GALK2Q01415 458 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ITKQ08881 620 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SLC10A7Q0GE19 358 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TOP3AQ13472 1001 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 FRG1Q14331 258 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 IMPG1Q17R60 797 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 DPY19L1Q2PZI1 675 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SMU1Q2TAY7 513 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ZFP69Q49AA0 526 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SNAP47Q5SQN1 464 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 OTUD3Q5T2D3 398 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ATAD3CQ5T2N8 411 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 AGBL4Q5VU57 503 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 AGAP6Q5VW22 663 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 STEAP3Q658P3 488 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF544Q6NX49 715 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TUBA3EQ6PEY2 450 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 USP30Q70CQ3 517 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 UTS2BQ765I0 119 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 PAGE2Q7Z2X7 111 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RYBPQ8N488 228 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CADM4Q8NFZ8 388 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 OR14C36Q8NHC7 312 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 C1orf216Q8TAB5 229 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 DYNC2LI1Q8TCX1 351 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 DNASE2BQ8WZ79 361 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ISG20Q96AZ6 181 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ZNF669Q96BR6 464 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 VPS39Q96JC1 886 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 FCRL3Q96P31 734 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 AGAP4Q96P64 663 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NODALQ96S42 347 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 AGAP2Q99490 1192 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ASPSCR1Q9BZE9 553 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 MIR1-1HGQ9H1L0 117 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 MUC13Q9H3R2 512 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ZDHHC6Q9H6R6 413 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RUBCNLQ9H714 662 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 MEAF6Q9HAF1 191 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 IL1RL2Q9HB29 575 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 IL36AQ9UHA7 158 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SLC39A10Q9ULF5 831 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 SCML1Q9UN30 329 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 RUVBL2Q9Y230 463 aaKnown RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 NCKAP1Q9Y2A7 1128 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-216ENST00000552909 CACNA1AO00555 2505 aa7.44□□□□□ -1.22
LIMA1-216ENST00000552909 TRPM6Q9BX84 2022 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 LOC105378220A0A1B0GUY1 285 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PDZK1P1A8MUH7 402 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 MUSKO15146 869 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 INSIG1O15503 277 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 LRP3O75074 770 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 THRBP10828 461 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 UMPSP11172 480 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 IMPDH1P20839 514 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 IL12AP29459 219 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ALDH4A1P30038 563 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 RECQLP46063 649 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 RGRP47804 291 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ALDH3A2P51648 485 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 ARSFP54793 590 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 VBP1P61758 197 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 LSM3P62310 102 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PPP2CBP62714 309 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PPP2CAP67775 309 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PPP2R2BQ00005 443 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PIGFQ07326 219 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 IL10RBQ08334 325 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 OLIG2Q13516 323 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PPP1R3AQ16821 1122 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CDONQ4KMG0 1287 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 INO80DQ53TQ3 878 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TRIM61Q5EBN2 209 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 C6orf141Q5SZD1 244 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PIP5KL1Q5T9C9 394 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 TBPL2Q6SJ96 375 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 PIWIL4Q7Z3Z4 852 aaKnown RBP7.43□□□□□ -1.22
LIMA1-216ENST00000552909 KDELC2Q7Z4H8 507 aa7.43□□□□□ -1.22
LIMA1-216ENST00000552909 CCDC28AQ8IWP9 274 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms