RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PIGAP37287 484 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 IL12RB1P42701 662 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 RFX3P48380 749 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 IDH2P48735 452 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ATP4BP51164 291 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 NUDT6P53370 316 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 TAS2R50P59544 299 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 TBPL1P62380 186 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 DBPQ10586 325 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 SMN1Q16637 294 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 USP39Q53GS9 565 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF542PQ5EBM4 170 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 CPTPQ5TA50 214 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 EGFLAMQ63HQ2 1017 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 LCN8Q6JVE9 175 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 PPP4R4Q6NUP7 873 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 GPR153Q6NV75 609 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF783Q6ZMS7 281 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 FAM83HQ6ZRV2 1179 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 KCTD8Q6ZWB6 473 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 HORMAD1Q86X24 394 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ZDHHC21Q8IVQ6 265 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 MICU2Q8IYU8 434 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 TBC1D21Q8IYX1 336 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 NLGN4XQ8N0W4 816 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 CPXM2Q8N436 756 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 PSD4Q8NDX1 1056 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 OR4A15Q8NGL6 344 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 OR14C36Q8NHC7 312 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 CXorf40AQ8TE69 158 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 UTP15Q8TED0 518 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF480Q8WV37 535 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 CLP1Q92989 425 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 EXOSC8Q96B26 276 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 DGCR14Q96DF8 476 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 F2RL3Q96RI0 385 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 SLC12A9Q9BXP2 914 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ABCG4Q9H172 646 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 CLK4Q9HAZ1 481 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 FANCEQ9HB96 536 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 VCX3AQ9NNX9 186 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 SLC52A3Q9NQ40 469 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 AGPAT4Q9NRZ5 378 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 PNPLA3Q9NST1 481 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 RHBDL2Q9NX52 303 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 SLC23A2Q9UGH3 650 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 FAF1Q9UNN5 650 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ABCG2Q9UNQ0 655 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF510Q9Y2H8 683 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 SAMHD1Q9Y3Z3 626 aaKnown RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 DYRK1BQ9Y463 629 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 SNX11Q9Y5W9 270 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 DOCK8Q8NF50 2099 aa5.41□□□□□ -1.54
LIMA1-215ENST00000552823 FNDC1Q4ZHG4 1894 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-215ENST00000552823 ANKDD1BA6NHY2 528 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 ANKRD28O15084 1053 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 LINC01565O15544 149 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 EPN2O95208 641 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 THRBP10828 461 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 IMPA1P29218 277 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 CHI3L1P36222 383 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 GJA8P48165 433 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 ARSFP54793 590 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 EEFSECP57772 596 aaKnown RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 HSPB3Q12988 150 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 KCNAB2Q13303 367 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 PMS2P3Q13401 168 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 TTC23LQ6PF05 361 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 KLHL17Q6TDP4 642 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF551Q7Z340 670 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 HEATR4Q86WZ0 1026 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 TICAM1Q8IUC6 712 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 AHI1Q8N157 1196 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 NAGSQ8N159 534 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 PGBD3Q8N328 593 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 HDDC3Q8N4P3 179 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 OR7G3Q8NG95 312 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 VANGL1Q8TAA9 524 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 BPIFB1Q8TDL5 484 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 OSCP1Q8WVF1 389 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 OR8D1Q8WZ84 308 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 NUS1Q96E22 293 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 DUSP26Q9BV47 211 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 ANKRA2Q9H9E1 313 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 CUEDC1Q9NWM3 386 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 VNN3Q9NY84 501 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 PDP1Q9P0J1 537 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 IFT80Q9P2H3 777 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-215ENST00000552823 SERGEFQ9UGK8 458 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 FBXO10Q9UK96 956 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 FZD4Q9ULV1 537 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 SPTBN2O15020 2390 aa5.4□□□□□ -1.54
LIMA1-215ENST00000552823 TBC1D3DA0A087WVF3 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3IA0A087WXS9 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3EA0A087X179 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3KA0A087X1G2 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3FA6NER0 549 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-215ENST00000552823 GABRR3A8MPY1 467 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 TBC1D3LB9A6J9 549 aa5.4□□□□□ -1.55
LIMA1-215ENST00000552823 H3BNH8 94 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms