RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CATSPEREQ5SY80 951 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LHX8Q68G74 356 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CAPN13Q6MZZ7 669 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 Q6ZNB5 142 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 AHSA2Q719I0 299 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FKBP9P1Q75LS8 142 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 HORMAD1Q86X24 394 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 GALNT13Q8IUC8 556 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SYT12Q8IV01 421 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CHCHD4Q8N4Q1 142 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SLC43A3Q8NBI5 491 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 NELL1Q92832 810 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SCAMP4Q969E2 229 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF566Q969W8 418 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SH3KBP1Q96B97 665 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TESCQ96BS2 214 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 YIPF6Q96EC8 236 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CMTM7Q96FZ5 175 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 IGSF21Q96ID5 467 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 HHIPQ96QV1 700 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SLC12A9Q9BXP2 914 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ZDHHC6Q9H6R6 413 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 IL21Q9HBE4 155 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 AMBNQ9NP70 447 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PALMDQ9NP74 551 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM184CQ9NVA4 438 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KIAA1522Q9P206 1035 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SNX6Q9UNH7 406 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KIAA1671Q9BY89 1806 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LRRK1Q38SD2 2015 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 MAGEB17A8MXT2 336 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 EVPLLA8MZ36 301 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 M0QX08 132 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PCDHGA12O60330 932 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FAM20BO75063 409 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 WBP4O75554 376 aaKnown RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 IGSF6O95976 241 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 VIPP01282 170 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SEMG1P04279 462 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 NTRK1P04629 796 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 UGT2B4P06133 528 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CKMP06732 381 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 C1SP09871 688 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 HIST1H2AGP0C0S8 130 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 COX7A2P14406 83 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 HIST1H2ADP20671 130 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TM4SF4P48230 202 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PFN3P60673 137 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 OCA2Q04671 838 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF846Q147U1 533 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 MAPK11Q15759 364 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SYT16Q17RD7 645 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 DUOXA1Q1HG43 343 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PLEKHG6Q3KR16 790 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PRSS36Q5K4E3 855 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FRG2Q64ET8 278 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 NIPAL1Q6NVV3 410 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LRRC70Q7Z2Q7 622 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 SERPINA11Q86U17 422 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 P2RY8Q86VZ1 359 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 RNF168Q8IYW5 571 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 CMTM8Q8IZV2 173 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LILRA3Q8N6C8 439 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 LMNTD1Q8N9Z9 388 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ATG16L2Q8NAA4 619 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 OR2AP1Q8NGE2 309 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 APH1BQ8WW43 257 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ASB11Q8WXH4 323 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 HIST1H2AHQ96KK5 128 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 FRG2BQ96QU4 278 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ZNF300Q96RE9 604 aaPredicted RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 HIST1H2AJQ99878 128 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 H2AFJQ9BTM1 129 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 MRPL9Q9BYD2 267 aaKnown RBP7.26□□□□□ -1.25
LIMA1-213ENST00000552720 GABARAPL1Q9H0R8 117 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TMEM165Q9HC07 324 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 TM9SF3Q9HD45 589 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 ACOT13Q9NPJ3 140 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KRT84Q9NSB2 600 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 KIF17Q9P2E2 1029 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 PCDHGB1Q9Y5G3 927 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 BACE2Q9Y5Z0 518 aa7.26□□□□□ -1.25
LIMA1-213ENST00000552720 OR2AG2A6NM03 316 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 E7EQ34 232 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 SOCS5O75159 536 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 OPN1SWP03999 348 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ACPPP15309 386 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 JUNDP17535 347 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 IL1RNP18510 177 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 DNAJA1P31689 397 aaKnown RBP7.25□□□□□ -1.25
LIMA1-213ENST00000552720 MTAPQ13126 283 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 IL18R1Q13478 541 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 VEPH1Q14D04 833 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 ACOX1Q15067 660 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 OXA1LQ15070 435 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 INAQ16352 499 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 RFX4Q33E94 735 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 CYP27C1Q4G0S4 372 aa7.25□□□□□ -1.25
LIMA1-213ENST00000552720 LYPLAL1Q5VWZ2 237 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms