RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 RPUSD3Q6P087 351 aaKnown RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 FAM180AQ6UWF9 173 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 ISLR2Q6UXK2 745 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 C4orf22Q6V702 233 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 LDB1Q86U70 411 aaPredicted RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 SLC13A5Q86YT5 568 aaPredicted RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 RNF10Q8N5U6 811 aaKnown RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 METTL27Q8N6F8 245 aaPredicted RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 DNAJB14Q8TBM8 379 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 STT3BQ8TCJ2 826 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 FAR1Q8WVX9 515 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 MVB12AQ96EY5 273 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 THOC3Q96J01 351 aaKnown RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 FOPNLQ96NB1 174 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 LMF1Q96S06 567 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 MIPEPQ99797 713 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 ZFYVE21Q9BQ24 234 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 SLX1AQ9BQ83 275 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 TRIM56Q9BRZ2 755 aaKnown RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 DESI2Q9BSY9 194 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 CRB3Q9BUF7 120 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 KRTAP4-11Q9BYQ6 195 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 IL22Q9GZX6 179 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 SOX17Q9H6I2 414 aaPredicted RBP7.27□□□□□ -1.25
NEK3-201ENST00000550331 ZNF304Q9HCX3 659 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 FER1L5A0AVI2 2057 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 NAV3Q8IVL0 2385 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 SPTBP11277 2137 aa7.27□□□□□ -1.25
NEK3-201ENST00000550331 PKDREJQ9NTG1 2253 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 A0A0J9YVX5 310 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 A0A0U1RQJ8 604 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 A0A1W2PPV9 198 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 OR2A25A4D2G3 310 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 H3BMM5 538 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 PFDN6O15212 129 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 VPS26AO75436 327 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 NDUFS3O75489 264 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 USP1O94782 785 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 MED26O95402 600 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 MATN4O95460 622 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ESR1P03372 595 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ZGLP1P0C6A0 271 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ERVK-10P10266 1014 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ERGP11308 486 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ETS1P14921 441 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ARNTP27540 789 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 PSMB5P28074 263 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CMPK1P30085 196 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 RPL22P35268 128 aaKnown RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 BDKRB1P46663 353 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 NPY2RP49146 381 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ADARP55265 1226 aaKnown RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 VSX2P58304 361 aaPredicted RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 KLC1Q07866 573 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 Q0VFX4 171 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 GBX1Q14549 363 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ARHGAP19Q14CB8 494 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CCNG2Q16589 344 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 TYSND1Q2T9J0 566 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 PRTGQ2VWP7 1150 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CCSMST1Q4G0I0 132 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CTSL3PQ5NE16 218 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ARMC3Q5W041 872 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ATG9BQ674R7 924 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 FRMPD2BQ6IN97 320 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 MRNIPQ6NTE8 343 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 DRICH1Q6PGQ1 229 aaPredicted RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 SHISA6Q6ZSJ9 500 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 SDCCAG8Q86SQ7 713 aaPredicted RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 PRUNE1Q86TP1 453 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 PARP9Q8IXQ6 854 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 KBTBD2Q8IY47 623 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 BCORP1Q8N888 145 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 SKA2Q8WVK7 121 aaPredicted RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 C1orf54Q8WWF1 131 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 MIEF2Q96C03 454 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CNDP1Q96KN2 507 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 C10orf90Q96M02 699 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 KIFC1Q9BW19 673 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 TSGA10Q9BZW7 698 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 RUBCNLQ9H714 662 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ZNF160Q9HCG1 818 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 C14orf105Q9NVL8 296 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 BFARQ9NZS9 450 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 ZC3H7BQ9UGR2 993 aaKnown RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 C3orf18Q9UK00 162 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CDC14AQ9UNH5 594 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 RUVBL2Q9Y230 463 aaKnown RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 DRG1Q9Y295 367 aaKnown RBP7.26□□□□□ -1.25
NEK3-201ENST00000550331 ZKSCAN5Q9Y2L8 839 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 NFS1Q9Y697 457 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 MAU2Q9Y6X3 613 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 NF1P21359 2839 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 PCNX1Q96RV3 2341 aa7.26□□□□□ -1.25
NEK3-201ENST00000550331 CCDC88CQ9P219 2028 aa7.25□□□□□ -1.25
NEK3-201ENST00000550331 SEC16AO15027 2179 aa7.25□□□□□ -1.25
NEK3-201ENST00000550331 LOC105369274A0A096LPK9 316 aa7.25□□□□□ -1.25
NEK3-201ENST00000550331 NSG1A0A0A6YYJ2 146 aa7.25□□□□□ -1.25
NEK3-201ENST00000550331 LOC102723532A0A0G2JNH3 316 aa7.25□□□□□ -1.25
NEK3-201ENST00000550331 A0A1B0GUH1 482 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms