RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 C1orf105O95561 183 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 LAMP1P11279 417 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 PRKACGP22612 351 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 SLC6A11P48066 632 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ESRRGP62508 458 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 FPGSQ05932 587 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 PMS2P3Q13401 168 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 FKBP9P1Q75LS8 142 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ADHFE1Q8IWW8 467 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 CHPFQ8IZ52 775 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 PJA1Q8NG27 643 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 OR7G3Q8NG95 312 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 NEIL2Q969S2 332 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ARRDC3Q96B67 414 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 HIC2Q96JB3 615 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ZFYVE19Q96K21 471 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 AMBRA1Q9C0C7 1298 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 BRF2Q9HAW0 419 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 AASDHPPTQ9NRN7 309 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 FAM118AQ9NWS6 357 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 USE1Q9NZ43 259 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 CHD9Q3L8U1 2897 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 MUC22E2RYF6 1773 aaPredicted RBP17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 H3BM21 787 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 LILRB5O75023 590 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 EFNA1P20827 205 aaPredicted RBP17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 PIGAP37287 484 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 DCTP40126 519 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 SPIDRQ14159 915 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ZCCHC8Q6NZY4 707 aaKnown RBP17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ZNF621Q6ZSS3 439 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 CLVS1Q8IUQ0 354 aaPredicted RBP17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 CFAP206Q8IYR0 622 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 C1orf52Q8N6N3 182 aaKnown RBP17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 LMNTD1Q8N9Z9 388 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 HUS1BQ8NHY5 278 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 ZNF480Q8WV37 535 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 FOPNLQ96NB1 174 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 RDH12Q96NR8 316 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 SAMD11Q96NU1 681 aa17.91■□□□□ 0.46
PRPF40B-208ENST00000548436 OTOL1A6NHN0 477 aaPredicted RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 CCNDBP1O95273 360 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 KCNK5O95279 499 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 CPSF4O95639 269 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 ADH1CP00326 375 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 PRNPP04156 253 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 HSD3B1P14060 373 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 HSD3B2P26439 372 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 HLCSP50747 726 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 C21orf58P58505 322 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 MYBPC3Q14896 1274 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 TMEM259Q4ZIN3 620 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 C9orf64Q5T6V5 341 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 XKR5Q6UX68 686 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 GPR155Q7Z3F1 870 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 RBM23Q86U06 439 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 ERI1Q8IV48 349 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 ETFBKMTQ8IXQ9 262 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 OR5K1Q8NHB7 308 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 RBM4BQ9BQ04 359 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 RBM4Q9BWF3 364 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 OR2AG1Q9H205 316 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 EPHX3Q9H6B9 360 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 FAM120CQ9NX05 1096 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 VNN3Q9NY84 501 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 EBF1Q9UH73 591 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 U3KQV3 271 aa17.9■□□□□ 0.46
PRPF40B-208ENST00000548436 GPX2P18283 190 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 POLR2IP36954 125 aaKnown RBP17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 UBE3AQ05086 875 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 LRRC23Q53EV4 343 aaPredicted RBP17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 SLCO4C1Q6ZQN7 724 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 KCTD8Q6ZWB6 473 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 GALNT10Q86SR1 603 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 SFTPA1Q8IWL2 248 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 ZZZ3Q8IYH5 903 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 EID3Q8N140 333 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 ST13P5Q8NFI4 369 aaPredicted RBP17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 SH3KBP1Q96B97 665 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 ISOC1Q96CN7 298 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 POLR1BQ9H9Y6 1135 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 CDC14AQ9UNH5 594 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 SH2B3Q9UQQ2 575 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 C2orf16Q68DN1 1984 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 GABRR3A8MPY1 467 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 SCAMP2O15127 329 aaKnown RBP17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 EPN2O95208 641 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 ZNF682O95780 498 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 ITGB7P26010 798 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 MAGEA2P43356 314 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 E2F2Q14209 437 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 RAB39AQ14964 217 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 C16orf72Q14CZ0 275 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 RBBP5Q15291 538 aaKnown RBP17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 GAB4Q2WGN9 574 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 BCL7AQ4VC05 210 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 FNDC3BQ53EP0 1204 aaKnown RBP17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 CATSPEREQ5SY80 951 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 THAP5Q7Z6K1 395 aa17.89■□□□□ 0.45
PRPF40B-208ENST00000548436 TMPRSS11BQ86T26 416 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms