RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CCDC181Q5TID7 509 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 KCTD11Q693B1 232 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 SPINK14Q6IE38 97 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 H3F3CQ6NXT2 135 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 DARS2Q6PI48 645 aaKnown RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 CDKL3Q8IVW4 592 aaPredicted RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 ZC3H7AQ8IWR0 971 aaKnown RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 GHDCQ8N2G8 530 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 DNAAF3Q8N9W5 541 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 ACTL9Q8TC94 416 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 NRGNQ92686 78 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 LRRC45Q96CN5 670 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 MVB12AQ96EY5 273 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 SCMH1Q96GD3 660 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 PPP1R2P1Q96PQ5 205 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 ALS2CR12Q96Q35 445 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 CHP1Q99653 195 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 FAM118BQ9BPY3 351 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 DPH7Q9BTV6 452 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 RAB11FIP5Q9BXF6 653 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 SYNPO2LQ9H987 977 aa12.06□□□□□ -0.48
SCAF11-208ENST00000546534 RUVBL1Q9Y265 456 aaKnown RBP12.06□□□□□ -0.48
SCAF11-208ENST00000546534 MACROD2A1Z1Q3 448 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 F8W8V4 182 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 FOXS1O43638 330 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 MAN1A2O60476 641 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 SLCO2B1O94956 709 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 APOA4P06727 396 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 ANXA5P08758 320 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 C8orf89P0DMQ9 161 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 DNAJA1P31689 397 aaKnown RBP12.05□□□□□ -0.48
SCAF11-208ENST00000546534 IST1P53990 364 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 MAT1AQ00266 395 aaKnown RBP12.05□□□□□ -0.48
SCAF11-208ENST00000546534 FASTKQ14296 549 aaKnown RBP12.05□□□□□ -0.48
SCAF11-208ENST00000546534 OR1C1Q15619 314 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 HKDC1Q2TB90 917 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 BTBD16Q32M84 506 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 LRRC8BQ6P9F7 803 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 TTC23LQ6PF05 361 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 LANCL3Q6ZV70 420 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 FGD2Q7Z6J4 655 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 LUZP1Q86V48 1076 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 TGIF2LYQ8IUE0 185 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 OR8K1Q8NGG5 319 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 KRT35Q92764 455 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 RAD51AP1Q96B01 352 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 DNAJC7Q99615 494 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 NPAS2Q99743 824 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 UTP23Q9BRU9 249 aaKnown RBP12.05□□□□□ -0.48
SCAF11-208ENST00000546534 CARD6Q9BX69 1037 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 COQ3Q9NZJ6 369 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 ASB1Q9Y576 335 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 NFS1Q9Y697 457 aa12.05□□□□□ -0.48
SCAF11-208ENST00000546534 A0A0A6YYC8 382 aaPredicted RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 A0A0U1RQJ8 604 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 I3L1I5 382 aaPredicted RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 PRRG2O14669 202 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 C1orf105O95561 183 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 TSPAN12O95859 305 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 GOT2P00505 430 aaKnown RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 AOAHP28039 575 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 BDKRB1P46663 353 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 CCDC38Q502W7 563 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 PLAG1Q6DJT9 500 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 LIAT1Q6ZQX7 453 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 GALNTL5Q7Z4T8 443 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 CPEB2Q7Z5Q1 589 aaKnown RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 TMEM200AQ86VY9 491 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 CRLF3Q8IUI8 442 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 EID3Q8N140 333 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 KRT222Q8N1A0 295 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 ARHGEF39Q8N4T4 335 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 CSNK1A1LQ8N752 337 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 TMEM178AQ8NBL3 297 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 HMGCLL1Q8TB92 370 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 METTL21AQ8WXB1 218 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 HDAC10Q969S8 669 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 CYTH2Q99418 400 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 ACAT2Q9BWD1 397 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 VN1R1Q9GZP7 353 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 CXXC4Q9H2H0 198 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 LRRC40Q9H9A6 602 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 IFNKQ9P0W0 207 aa12.04□□□□□ -0.48
SCAF11-208ENST00000546534 TTC7AQ9ULT0 858 aaPredicted RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 RUVBL2Q9Y230 463 aaKnown RBP12.04□□□□□ -0.48
SCAF11-208ENST00000546534 PRRC2AP48634 2157 aaKnown RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 DNHD1Q96M86 4753 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 NKX2-6A6NCS4 301 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 FOXO6A8MYZ6 492 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 FAM155BO75949 473 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 METTL18O95568 372 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 MBD3O95983 291 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 SP1P08047 785 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 DRD2P14416 443 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 KLK2P20151 261 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 CTNNA2P26232 953 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 CMPK1P30085 196 aa12.03□□□□□ -0.48
SCAF11-208ENST00000546534 SNRPNP63162 240 aaKnown RBP12.03□□□□□ -0.48
SCAF11-208ENST00000546534 TPM4P67936 248 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms