RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 UGDHO60701 494 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 ALPIP09923 528 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 BPIP17213 487 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 FSHRP23945 695 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 CTSKP43235 329 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 RPIAP49247 311 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 CLK1P49759 484 aaKnown RBP13.31□□□□□ -0.28
VPS33A-208ENST00000543633 LSM3P62310 102 aaKnown RBP13.31□□□□□ -0.28
VPS33A-208ENST00000543633 RPP38P78345 283 aaKnown RBP13.31□□□□□ -0.28
VPS33A-208ENST00000543633 ZNF45Q02386 682 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 PRKCDQ05655 676 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 SLC14A1Q13336 389 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 DGCR6Q14129 220 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 OR4F3Q6IEY1 312 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 TRAF7Q6Q0C0 670 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 TPGS1Q6ZTW0 290 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 C16orf59Q7L2K0 433 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 METTL3Q86U44 580 aaKnown RBP13.31□□□□□ -0.28
VPS33A-208ENST00000543633 ANKRD46Q86W74 232 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 LYSMD2Q8IV50 215 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 SYNPOQ8N3V7 929 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 CHTF18Q8WVB6 975 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 LYSMD1Q96S90 227 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 RAD9AQ99638 391 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 KLF16Q9BXK1 252 aaPredicted RBP13.31□□□□□ -0.28
VPS33A-208ENST00000543633 SLC12A9Q9BXP2 914 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 KLHL25Q9H0H3 589 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 ARL15Q9NXU5 204 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 ZDHHC3Q9NYG2 299 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 VPS51Q9UID3 782 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 PADI2Q9Y2J8 665 aa13.31□□□□□ -0.28
VPS33A-208ENST00000543633 PABPN1LA6NDY0 278 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 AGAP5A6NIR3 686 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 MAGEB17A8MXT2 336 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 NUAK1O60285 661 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CKBP12277 381 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ENGP17813 658 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 TACR1P25103 407 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 IL1RL1Q01638 556 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 DNASE1L3Q13609 305 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 IQCCQ4KMZ1 466 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 DEPDC1Q5TB30 811 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 NOXRED1Q6NXP6 359 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PNCKQ6P2M8 343 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CCDC71Q8IV32 467 aaPredicted RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 P3H2Q8IVL5 708 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ENTHD1Q8IYW4 607 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CLDN19Q8N6F1 224 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 APH1BQ8WW43 257 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PANX1Q96RD7 426 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 HERC2P3Q9BVR0 1158 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 TRPM5Q9NZQ8 1165 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PSORS1C1Q9UIG5 152 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ZNF229Q9UJW7 825 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ERVK-11Q9UQG0 969 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PCDHGB3Q9Y5G1 929 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PIKFYVEQ9Y2I7 2098 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 hCG_2039718K7EN88 272 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 AIREO43918 545 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PCDHGA12O60330 932 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 SCN2BO60939 215 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 INHAP05111 366 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ABCB1P08183 1280 aaPredicted RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PABPC1P11940 636 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CA5AP35218 305 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 GGT2P36268 569 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 AP1S2P56377 157 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CREMQ03060 361 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 BCL2L1Q07817 233 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CD300CQ08708 224 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 LRRC74AQ0VAA2 488 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ELOAQ14241 798 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CHRNA6Q15825 494 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 RTP2Q5QGT7 225 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CATSPEREQ5SY80 951 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ATXN7L2Q5T6C5 722 aaPredicted RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 FRG2Q64ET8 278 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 LHX8Q68G74 356 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 AHSA2Q719I0 299 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 SLC46A3Q7Z3Q1 461 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 SLAIN1Q8ND83 568 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 C7orf34Q96L11 122 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 FRG2BQ96QU4 278 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 CTRCQ99895 268 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 TMEM175Q9BSA9 504 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 COPS4Q9BT78 406 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 REXO4Q9GZR2 422 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 MOV10Q9HCE1 1003 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 TRMT13Q9NUP7 481 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 ADPRHL2Q9NX46 363 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 RNF6Q9Y252 685 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 FCF1Q9Y324 198 aaKnown RBP13.3□□□□□ -0.28
VPS33A-208ENST00000543633 PCDHGA6Q9Y5G7 932 aa13.3□□□□□ -0.28
VPS33A-208ENST00000543633 IGLV3-16A0A075B6K0 115 aa13.29□□□□□ -0.28
VPS33A-208ENST00000543633 A0A0U1RQS6 177 aa13.29□□□□□ -0.28
VPS33A-208ENST00000543633 TSPAN3O60637 253 aa13.29□□□□□ -0.28
VPS33A-208ENST00000543633 LCKP06239 509 aa13.29□□□□□ -0.28
VPS33A-208ENST00000543633 CDK1P06493 297 aa13.29□□□□□ -0.28
VPS33A-208ENST00000543633 HSD3B1P14060 373 aa13.29□□□□□ -0.28
VPS33A-208ENST00000543633 JUPP14923 745 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms