RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 THG1LQ9NWX6 298 aaKnown RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 GALNT8Q9NY28 637 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 YBX2Q9Y2T7 364 aaKnown RBP13.32□□□□□ -0.28
RTN3-210ENST00000540798 FADS3Q9Y5Q0 445 aa13.32□□□□□ -0.28
RTN3-210ENST00000540798 CKAP5Q14008 2032 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 RNF103-CHMP3A0A140T963 221 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 GMNNO75496 209 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 ZNF8P17098 575 aaPredicted RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 KIR3DL1P43629 444 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 RPS9P46781 194 aaKnown RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 TBPL1P62380 186 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 CHRNB3Q05901 458 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 DUOXA1Q1HG43 343 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 PGS1Q32NB8 556 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 CYBRD1Q53TN4 286 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 C9orf50Q5SZB4 431 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 PIP5KL1Q5T9C9 394 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 TANGO2Q6ICL3 276 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 OR4F3Q6IEY1 312 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 ADAMTSL4Q6UY14 1074 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 SYT12Q8IV01 421 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 NELL1Q92832 810 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 MTERF1Q99551 399 aaKnown RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 EBPLQ9BY08 206 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 EHD1Q9H4M9 534 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 DZANK1Q9NVP4 752 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 SMPD3Q9NY59 655 aaPredicted RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 MYRFQ9Y2G1 1151 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 GSTA4O15217 222 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 DEAF1O75398 565 aaPredicted RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 MT-ND1P03886 318 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 GNAO1P09471 354 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 NPPBP16860 134 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 HOXB6P17509 224 aaKnown RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 C10orf62Q5T681 223 aaPredicted RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 ISLR2Q6UXK2 745 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 SERPINA11Q86U17 422 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 LAS2Q8IYD9 372 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 PGBD3Q8N328 593 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 AURKBQ96GD4 344 aaPredicted RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 REXO4Q9GZR2 422 aaKnown RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 LMAN2LQ9H0V9 348 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 FAM120CQ9NX05 1096 aaKnown RBP13.31□□□□□ -0.28
RTN3-210ENST00000540798 V9GYQ6 96 aa13.31□□□□□ -0.28
RTN3-210ENST00000540798 MAGEB17A8MXT2 336 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 CREG1O75629 220 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 LRATO95237 230 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ADARB1P78563 741 aaKnown RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 PON2Q15165 354 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 NADK2Q4G0N4 442 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 KCTD21Q4G0X4 260 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ADNP2Q6IQ32 1131 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 CAPN13Q6MZZ7 669 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 GCNT7Q6ZNI0 430 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 GET4Q7L5D6 327 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 DSG4Q86SJ6 1040 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ANKRD46Q86W74 232 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 TRAPPC5Q8IUR0 188 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 FAM47BQ8NA70 645 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 OR9A1PQ8NGU1 263 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 STARD8Q92502 1023 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 CIDEBQ9UHD4 219 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ERVK-11Q9UQG0 969 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 KCNE2Q9Y6J6 123 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 DOCK8Q8NF50 2099 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 CCDC85CA6NKD9 419 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 C1QTNF3-AMACRE9PGA6 284 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 FOXE1O00358 373 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 RFXANKO14593 260 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 LZTS3O60299 673 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 GJA4P35212 333 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 CAPGP40121 348 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 EIF2DP41214 584 aaKnown RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 NR1H2P55055 460 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 SLC14A1Q13336 389 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ENPP2Q13822 863 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 SPIN4Q56A73 249 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 GALNT18Q6P9A2 607 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 BORAQ6PGQ7 559 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 UNC5DQ6UXZ4 953 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 MMAAQ8IVH4 418 aaKnown RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 CPA6Q8N4T0 437 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 TSPAN14Q8NG11 270 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 OR7A2PQ8NGA2 310 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 HUS1BQ8NHY5 278 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 FAM120BQ96EK7 910 aaKnown RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 RMND5BQ96G75 393 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 ABHD8Q96I13 439 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 HIC2Q96JB3 615 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 VPS50Q96JG6 964 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 ZDHHC5Q9C0B5 715 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 OR52A5Q9H2C5 316 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 SH2B3Q9UQQ2 575 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 PCYT1BQ9Y5K3 369 aaPredicted RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 SCAMP2O15127 329 aaKnown RBP13.3□□□□□ -0.28
RTN3-210ENST00000540798 HPRP00739 348 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 TUBA4AP68366 448 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 RUNX3Q13761 415 aa13.3□□□□□ -0.28
RTN3-210ENST00000540798 GTF2H3Q13889 308 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms