RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 RBM7Q9Y580 266 aaKnown RBP13.71□□□□□ -0.21
USP3-204ENST00000540797 OR6C74A6NCV1 312 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 CAPN8A6NHC0 703 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 GBAP04062 536 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 C8orf89P0DMQ9 161 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 RPS9P46781 194 aaKnown RBP13.71□□□□□ -0.22
USP3-204ENST00000540797 MEF2AQ02078 507 aaPredicted RBP13.71□□□□□ -0.22
USP3-204ENST00000540797 TBC1D25Q3MII6 688 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 SVOPLQ8N434 492 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 MR1Q95460 341 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 ARMC5Q96C12 935 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 C1GALT1C1Q96EU7 318 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 IFT27Q9BW83 186 aa13.71□□□□□ -0.22
USP3-204ENST00000540797 SMPD3Q9NY59 655 aaPredicted RBP13.71□□□□□ -0.22
USP3-204ENST00000540797 DGKQP52824 942 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 VSX2P58304 361 aaPredicted RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 GPR65Q8IYL9 337 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 SLC25A36Q96CQ1 311 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 CAMK1GQ96NX5 476 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 KLRF1Q9NZS2 232 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 DMTF1Q9Y222 760 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 NWD2Q9ULI1 1742 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 SCDO00767 359 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 CHST10O43529 356 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 FADS2O95864 444 aaKnown RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 CAPGP40121 348 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 DUOXA1Q1HG43 343 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 BTN2A1Q7KYR7 527 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 C3orf58Q8NDZ4 430 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 NAT14Q8WUY8 206 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 TSACCQ96A04 125 aaPredicted RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 ZNF570Q96NI8 536 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 FAM192AQ9GZU8 254 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 MPC1LP0DKB6 136 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 ZNF823P16415 610 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 LEPRP48357 1165 aaKnown RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 ARFIP1P53367 373 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 OLR1P78380 273 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 PACS2Q86VP3 889 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 CBR4Q8N4T8 237 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 TRNT1Q96Q11 434 aaKnown RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 SLC17A9Q9BYT1 436 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 MVB12BQ9H7P6 319 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 LMAN1LQ9HAT1 526 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 ARHGEF3Q9NR81 526 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 HEXBP07686 556 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 DRD1P21728 446 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 DECR1Q16698 335 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 OR4K17Q8NGC6 315 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 TSEN15Q8WW01 171 aaKnown RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 LRTOMTQ8WZ04 291 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 AP3S1Q92572 193 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 RFKQ969G6 155 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 FCRL3Q96P31 734 aaPredicted RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 RANBP9Q96S59 729 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 COQ7Q99807 217 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 C17orf62Q9BQA9 187 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 C11orf16Q9NQ32 467 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 PGRMC2O15173 223 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 DUX1O43812 170 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 MPZL2O60487 215 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 ADRB3P13945 408 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 ARSAP15289 507 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 SLC18A2Q05940 514 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 TARDBPQ13148 414 aaKnown RBP eCLIP13.7□□□□□ -0.22
USP3-204ENST00000540797 RAB6CQ53S08 254 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 MMABQ96EY8 250 aaPredicted RBP13.7□□□□□ -0.22
USP3-204ENST00000540797 OR52B2Q96RD2 323 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 RAB6CQ9H0N0 254 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 PGAP2Q9UHJ9 254 aa13.7□□□□□ -0.22
USP3-204ENST00000540797 PLK4O00444 970 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 SLC16A5O15375 505 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 SRCP12931 536 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 RPL5P46777 297 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 NIPAL4Q0D2K0 466 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 TAB1Q15750 504 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 RPS27LQ71UM5 84 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 IQCHQ86VS3 1027 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 TICAM1Q8IUC6 712 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 CPSF4LA6NMK7 179 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 SOCS7O14512 581 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 HERC3Q15034 1050 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 NIPAL1Q6NVV3 410 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.69□□□□□ -0.223e-6■■■■■ 29
USP3-204ENST00000540797 METTL27Q8N6F8 245 aaPredicted RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 NPWQ8N729 165 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 CHST14Q8NCH0 376 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 GRHL3Q8TE85 626 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 JPH3Q8WXH2 748 aaPredicted RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 CGREF1Q99674 301 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 LYARQ9NX58 379 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 PCDHGA12O60330 932 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 SEC24AO95486 1093 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 RAP2AP10114 183 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 GANABQ14697 944 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 ZNF678Q5SXM1 525 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 UBAP2Q5T6F2 1119 aaKnown RBP13.69□□□□□ -0.22
USP3-204ENST00000540797 GPR107Q5VW38 600 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 KLHL17Q6TDP4 642 aa13.69□□□□□ -0.22
USP3-204ENST00000540797 OR56A1Q8NGH5 318 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms