RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 RHOAP61586 193 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 BMT2Q1RMZ1 405 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ZACNQ401N2 412 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SFRP4Q6FHJ7 346 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 BEND4Q6ZU67 534 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ARL14Q8N4G2 192 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 UTP4Q969X6 686 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 OR14A2Q96R54 314 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 LMAN2LQ9H0V9 348 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ATG10Q9H0Y0 220 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 NIPAL2Q9H841 368 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ZDHHC2Q9UIJ5 367 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SLC35F4A4IF30 521 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 TYROBPO43914 113 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ENDOD1O94919 500 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 INHAP05111 366 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 IL3P08700 152 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CYP2A6P11509 494 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 CHATP28329 748 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 GMPRP36959 345 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 DDOSTP39656 456 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SLC11A2P49281 568 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 GAD2Q05329 585 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 RAB33AQ14088 237 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SUSD4Q5VX71 490 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 FAM122BQ7Z309 247 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 C7orf43Q8WVR3 580 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SLCO2A1Q92959 643 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 UBE2E3Q969T4 207 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CCDC74AQ96AQ1 378 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SAMD9LQ8IVG5 1584 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 COL15A1P39059 1388 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 AGPAT2O15120 278 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 UBBP0CG47 229 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 UBCP0CG48 685 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 CKMT1AP12532 417 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CDKN2BP42772 138 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 FBXO47Q5MNV8 452 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 DRICH1Q6PGQ1 229 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 MPZL3Q6UWV2 235 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ALKAL2Q6UX46 152 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 TMEM192Q8IY95 271 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 FAM46DQ8NEK8 389 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 PAQR8Q8TEZ7 354 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 EXOSC8Q96B26 276 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 NKX6-2Q9C056 277 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 ZNF768Q9H5H4 540 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.54□□□□□ -1.041e-6■■□□□ 12.5
YBX3-208ENST00000540447 ZNF282Q9UDV7 671 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 SPATA31D3P0C874 917 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 T-ENOLP0DO92 83 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 DRD5P21918 477 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 MANFP55145 182 aaKnown RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 RNF4P78317 190 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ADIGQ0VDE8 80 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CEACAM7Q14002 265 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CRB2Q5IJ48 1285 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 MBLAC2Q68D91 279 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SMARCD3Q6STE5 483 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 SPATA31D4Q6ZUB0 917 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 TFAP2DQ7Z6R9 452 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 FAIM2Q9BWQ8 316 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 TCEAL2Q9H3H9 227 aaPredicted RBP8.54□□□□□ -1.04
YBX3-208ENST00000540447 AKTIPQ9H8T0 292 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 MOCS1Q9NZB8 636 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 ACTL7AQ9Y615 435 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 CDH10Q9Y6N8 788 aa8.54□□□□□ -1.04
YBX3-208ENST00000540447 STK25O00506 426 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 SCAMP3O14828 347 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 NKRFO15226 690 aaKnown RBP eCLIP8.53□□□□□ -1.04
YBX3-208ENST00000540447 TPST2O60704 377 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 FMO6PO60774 539 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RBBP9O75884 186 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 SOX30O94993 753 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RAB3DO95716 219 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 DCNP07585 359 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 ZBTB48P10074 688 aaPredicted RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 CHRNB2P17787 502 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ST8SIA6P61647 398 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RPS27AP62979 156 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 UBA52P62987 128 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 SP140Q13342 867 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 LAPTM4AQ15012 233 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 C10orf62Q5T681 223 aaPredicted RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 TRMT10BQ6PF06 316 aaKnown RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 PRSS48Q7RTY5 328 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RASGEF1AQ8N9B8 481 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 POC1BQ8TC44 478 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 PRR11Q96HE9 360 aaPredicted RBP8.53□□□□□ -1.04
YBX3-208ENST00000540447 MYRFLQ96LU7 910 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 CCDC74BQ96LY2 380 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 ARHGEF4Q9NR80 690 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 DNAJC27Q9NZQ0 273 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 NARFQ9UHQ1 456 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 PCDHGB1Q9Y5G3 927 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 A0A1B0GV50 99 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 RAMP2O60895 175 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 HNF1AP20823 631 aa8.53□□□□□ -1.04
YBX3-208ENST00000540447 HADHBP55084 474 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms