RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 ZNF740Q8NDX6 193 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 OR4K1Q8NGD4 311 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 ZNF75CPQ92670 426 aaPredicted RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 GATA6Q92908 595 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 ZNF501Q96CX3 271 aaPredicted RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 SCYL1Q96KG9 808 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 NSUN5Q96P11 429 aaKnown RBP12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CTRCQ99895 268 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 EGFL8Q99944 293 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 PLCD4Q9BRC7 762 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 TRIM54Q9BYV2 358 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 SPRY4Q9C004 299 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CHRNA10Q9GZZ6 450 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 MANSC1Q9H8J5 431 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 ZBTB26Q9HCK0 441 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CD274Q9NZQ7 290 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 MSRB2Q9Y3D2 182 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 SPTBP11277 2137 aa12.47□□□□□ -0.41
CCDC42-202ENST00000539522 CFAP47Q6ZTR5 3102 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 LOC105369274A0A096LPK9 316 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 LOC102723532A0A0G2JNH3 316 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 WDR91A4D1P6 747 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 TRABD2BA6NFA1 517 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 CDRT15L2A8MXV6 281 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 B4E171 279 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 H7BY64 318 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PLD2O14939 933 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 LCMT2O60294 686 aaKnown RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 WDR47O94967 919 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 RPS17P08708 135 aaKnown RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 MSL3P1P0C860 447 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ZNF28P17035 718 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 VARSP26640 1264 aaKnown RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 TSPAN7P41732 249 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PRKAA2P54646 552 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ALDH18A1P54886 795 aaKnown RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 NFKB2Q00653 900 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 MEF2AQ02078 507 aaPredicted RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PCLAFQ15004 111 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PCBP2Q15366 365 aaKnown RBP eCLIP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 UNC50Q53HI1 259 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ADNP2Q6IQ32 1131 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 CAPN13Q6MZZ7 669 aaPredicted RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 SLCO4C1Q6ZQN7 724 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 RNF44Q7L0R7 432 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 KMT5CQ86Y97 462 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 OR4N4Q8N0Y3 316 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 FBXO39Q8N4B4 442 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ARHGEF39Q8N4T4 335 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 RAB42Q8N4Z0 105 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 AGBL5Q8NDL9 886 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ABHD11Q8NFV4 315 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 OR1L3Q8NH93 324 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 RAB3IL1Q8TBN0 382 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 LRRC8CQ8TDW0 803 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 SREK1Q8WXA9 508 aaKnown RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ATL1Q8WXF7 558 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 SLC22A18Q96BI1 424 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 GRAMD1AQ96CP6 724 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PHF21BQ96EK2 531 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 CHMP6Q96FZ7 201 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ZNF285Q96NJ3 590 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PRAP1Q96NZ9 151 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 TMEM237Q96Q45 408 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 C1QTNF3Q9BXJ4 246 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ZMYND15Q9H091 742 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 MRPS30Q9NP92 439 aaKnown RBP12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ENAMQ9NRM1 1142 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 WWOXQ9NZC7 414 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 FOXJ2Q9P0K8 574 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 ZNF225Q9UK10 706 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PCTPQ9UKL6 214 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 PCDHGA8Q9Y5G5 932 aa12.46□□□□□ -0.41
CCDC42-202ENST00000539522 KNTC1P50748 2209 aa12.46□□□□□ -0.42
CCDC42-202ENST00000539522 PABPN1LA6NDY0 278 aaKnown RBP12.45□□□□□ -0.42
CCDC42-202ENST00000539522 ZNF839A8K0R7 811 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 TCP11X1B4DZS4 312 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 STX16-NPEPL1H3BU86 382 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 OR7A17O14581 309 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 STX16O14662 325 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 KLF11O14901 512 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 STK16O75716 305 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 TBX6O95947 436 aaPredicted RBP12.45□□□□□ -0.42
CCDC42-202ENST00000539522 VIMP08670 466 aaKnown RBP12.45□□□□□ -0.42
CCDC42-202ENST00000539522 FGF5P12034 268 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 TAC1P20366 129 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 ARRB2P32121 409 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 CCR10P46092 362 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 GABREP78334 506 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 PCDH1Q08174 1060 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 ATG16L1Q676U5 607 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 IGF2-ASQ6U949 168 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 ZYG11AQ6WRX3 759 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 VN1R4Q7Z5H5 301 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 SHISA5Q8N114 240 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 TCAIMQ8N3R3 496 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 DTWD1Q8N5C7 304 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 SLC38A9Q8NBW4 561 aa12.45□□□□□ -0.42
CCDC42-202ENST00000539522 WDR36Q8NI36 951 aaKnown RBP12.45□□□□□ -0.42
CCDC42-202ENST00000539522 ZNF483Q8TF39 744 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms