RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TMEM184CQ9NVA4 438 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 DHCR7Q9UBM7 475 aaKnown RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 PRDM4Q9UKN5 801 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 SH2B3Q9UQQ2 575 aa14.39□□□□□ -0.11
CPSF1-208ENST00000532560 MRPS18BQ9Y676 258 aaKnown RBP14.39□□□□□ -0.11
CPSF1-208ENST00000532560 FER1L5A0AVI2 2057 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 BAHCC1Q9P281 2608 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 LOC105369274A0A096LPK9 316 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 LOC102723532A0A0G2JNH3 316 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 A0A1B0GX78 115 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 C9J4A7 227 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 H0YGG7 62 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 HAT1O14929 419 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 RECKO95980 971 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 CAPN1P07384 714 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 INHBAP08476 426 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 AGXTP21549 392 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 PTPN4P29074 926 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 SERPINB8P50452 374 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 VSX2P58304 361 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ARF3P61204 181 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-208ENST00000532560 CSHL1Q14406 222 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 CASP8Q14790 479 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 TGFBIQ15582 683 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 CDKL4Q5MAI5 379 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 WASHC2DQ5SRD0 308 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 MROH9Q5TGP6 573 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 LCN10Q6JVE6 187 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 RAPH1Q70E73 1250 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 TAOK1Q7L7X3 1001 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 TBC1D1Q86TI0 1168 aaPredicted RBP14.38□□□□□ -0.11
CPSF1-208ENST00000532560 OR4N4Q8N0Y3 316 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 SPATA6LQ8N4H0 392 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ISL2Q96A47 359 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 KIAA1191Q96A73 305 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ALKBH8Q96BT7 664 aaKnown RBP14.38□□□□□ -0.11
CPSF1-208ENST00000532560 PTERQ96BW5 349 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 PYCR2Q96C36 320 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 RHBDF1Q96CC6 855 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 OR2A5Q96R48 311 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 OR4K3Q96R72 315 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 RUFY1Q96T51 708 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 EGFL8Q99944 293 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 C17orf62Q9BQA9 187 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 NLNQ9BYT8 704 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 TXLNGYQ9BZA5 131 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 UNKQ9C0B0 810 aaKnown RBP14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ACTL8Q9H568 366 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 SNX15Q9NRS6 342 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 CUTCQ9NTM9 273 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ZNF180Q9UJW8 692 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ATRXP46100 2492 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 MGAQ8IWI9 3026 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 ZFYVE26Q68DK2 2539 aa14.38□□□□□ -0.11
CPSF1-208ENST00000532560 SEC16AO15027 2179 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 NBEAQ8NFP9 2946 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 A0A087X1B8 175 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 CCDC189A1A4V9 331 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 H7BY64 318 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 DSCR3O14972 297 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 NKX2-8O15522 239 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 RIPK2O43353 540 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 KATNA1O75449 491 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 CREG1O75629 220 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 ALDOAP04075 364 aaKnown RBP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 LTA4HP09960 611 aaKnown RBP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 FAM153BP0C7A2 387 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 CDH1P12830 882 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 NPPBP16860 134 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 SERPINB9P50453 376 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 PMS2P54278 862 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 EMP3P54852 163 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 RPS15AP62244 130 aaKnown RBP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 RPS15P62841 145 aaKnown RBP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 CYP4F2P78329 520 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 DCDP81605 110 aaKnown RBP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 NCF4Q15080 339 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 OR4D1Q15615 310 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 PRTGQ2VWP7 1150 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 FAM153CQ494X1 144 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 TAF1BQ53T94 588 aaPredicted RBP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 C1orf189Q5VU69 101 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 SYVN1Q86TM6 617 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 GPSM1Q86YR5 675 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 KLHDC8AQ8IYD2 350 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 TCAIMQ8N3R3 496 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 ABHD11Q8NFV4 315 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.37□□□□□ -0.11
CPSF1-208ENST00000532560 PKNOX2Q96KN3 472 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 PRAP1Q96NZ9 151 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 CATSPER2Q96P56 530 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 DHRS4Q9BTZ2 278 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 SYNPO2LQ9H987 977 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 NMRAL1Q9HBL8 299 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 IGSF5Q9NSI5 407 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 STARD5Q9NSY2 213 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 ACOT9Q9Y305 439 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 IKBKGQ9Y6K9 419 aa14.37□□□□□ -0.11
CPSF1-208ENST00000532560 HYKKA2RU49 373 aa14.36□□□□□ -0.11
CPSF1-208ENST00000532560 IPO13O94829 963 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms