RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ATG16L1Q676U5 607 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ANKS6Q68DC2 871 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 AGTRAPQ6RW13 159 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 RGS9BPQ6ZS82 235 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 C10orf107Q8IVU9 208 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 DCUN1D3Q8IWE4 304 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 KLHDC8AQ8IYD2 350 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 FBXO39Q8N4B4 442 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 MINDY1Q8N5J2 469 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ANKRD42Q8N9B4 389 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 FAM181AQ8N9Y4 354 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ZNF548Q8NEK5 533 aaPredicted RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 GPR156Q8NFN8 814 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 OR6C4Q8NGE1 309 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 OR5AR1Q8NGP9 310 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 DYDC1Q8WWB3 177 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 CKAP2Q8WWK9 683 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ZNF75CPQ92670 426 aaPredicted RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 FBXL8Q96CD0 374 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 CXorf40BQ96DE9 158 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 PKP4Q99569 1192 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 EGFL8Q99944 293 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 PAIP2Q9BPZ3 127 aaKnown RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 TRMOQ9BU70 441 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 RAB11FIP5Q9BXF6 653 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ERVK-6Q9BXR3 956 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 UNKQ9C0B0 810 aaKnown RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 CCDC134Q9H6E4 229 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 POT1Q9NUX5 634 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 IMP3Q9NV31 184 aaKnown RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 UTP6Q9NYH9 597 aaKnown RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 NLGN3Q9NZ94 848 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 NCKIPSDQ9NZQ3 722 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 CPNE7Q9UBL6 633 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ADAM30Q9UKF2 790 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ADAM21Q9UKJ8 722 aa7.16□□□□□ -1.26
CD44-228ENST00000528455 ASCC3Q8N3C0 2202 aaKnown RBP7.16□□□□□ -1.26
CD44-228ENST00000528455 PCDH15Q96QU1 1955 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 PCNX2A6NKB5 2137 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ARID1BQ8NFD5 2236 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 TPRP12270 2363 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 TRBV23OR9-2A0A075B6M9 112 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 FAM221BA6H8Z2 402 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 OR52A4PA6NMU1 304 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 A8MT66 165 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 SUPT3HB4E1H0 165 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 E7ENX8 843 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 UBXN8O00124 270 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ZW10O43264 779 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 NUDT21O43809 227 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 NOBOXO60393 691 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 NPHS1O60500 1241 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 SUPT3HO75486 399 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 STK16O75716 305 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ATE1O95260 518 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 HTR3BO95264 441 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 SLC16A8O95907 504 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 SERPINE1P05121 402 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 FGF4P08620 206 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ERGP11308 486 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 NEFHP12036 1026 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 EPHA8P29322 1005 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 GPR3P46089 330 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 PNLIPRP1P54315 467 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 UBE2IP63279 158 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 TAP2Q03519 686 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 PRKG2Q13237 762 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 STX3Q13277 289 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 CDK5R2Q13319 367 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ZXDCQ2QGD7 858 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 CCSMST1Q4G0I0 132 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 CFAP157Q5JU67 520 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 TMEM201Q5SNT2 666 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ZNF678Q5SXM1 525 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 CHCHD2P9Q5T1J5 151 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 ZCCHC8Q6NZY4 707 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 ZAR1Q86SH2 424 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 AMIGO1Q86WK6 493 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 TRIM48Q8IWZ4 208 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 MRPL41Q8IXM3 137 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 LRRC56Q8IYG6 542 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 ARL14Q8N4G2 192 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 PTGR2Q8N8N7 351 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 OR56A3Q8NH54 315 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 OR4C6Q8NH72 309 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 MAPK15Q8TD08 544 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ZNF480Q8WV37 535 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 SLC22A18Q96BI1 424 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 PHF21BQ96EK2 531 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 MIPEPQ99797 713 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 MENTQ9BUN1 341 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 GATA5Q9BWX5 397 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 TWSG1Q9GZX9 223 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 DRC3Q9H069 523 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 PCBD2Q9H0N5 130 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 STN1Q9H668 368 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 EML4Q9HC35 981 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 FSCN3Q9NQT6 498 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 INTS7Q9NVH2 962 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 THAP1Q9NVV9 213 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms