RNA–Protein interactions for RNA: ENST00000527064.1

NXF1-204, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-204	ENST00000527064	THAP11	Q96EK4	314 aa		13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	UBXN10	Q96LJ8	280 aa		13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	PRAP1	Q96NZ9	151 aa		13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	NMRAL1	Q9HBL8	299 aa		13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	CUEDC1	Q9NWM3	386 aa	Predicted RBP	13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	IFT80	Q9P2H3	777 aa	Predicted RBP	13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	LOC400499	M0QZD8	3231 aa		13.77	□□□□□ -0.21
NXF1-204	ENST00000527064	LOC105369274	A0A096LPK9	316 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	LOC102723532	A0A0G2JNH3	316 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CCDC189	A1A4V9	331 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	HYKK	A2RU49	373 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	EIF4E1B	A6NMX2	242 aa	Known RBP	13.76	□□□□□ -0.21
NXF1-204	ENST00000527064		H0YGG7	62 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	TK2	O00142	265 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	ZNF500	O60304	480 aa	Predicted RBP	13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	IPO13	O94829	963 aa	Known RBP	13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	S100B	P04271	92 aa	Predicted RBP	13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	ABHD2	P08910	425 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CDH1	P12830	882 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CNTF	P26441	200 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	SERPINB8	P50452	374 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	SERPINB9	P50453	376 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CCR8	P51685	355 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	ARF3	P61204	181 aa	Predicted RBP	13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	BMPR2	Q13873	1038 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	ERV3-1	Q14264	604 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	TGFBI	Q15582	683 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	UGT8	Q16880	541 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	MUM1	Q2TAK8	710 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	NKAIN1	Q4KMZ8	207 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CDKL4	Q5MAI5	379 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	TEX35	Q5T0J7	233 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	LCN10	Q6JVE6	187 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	PRMT9	Q6P2P2	845 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CMC1	Q7Z7K0	106 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	GPSM1	Q86YR5	675 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	OR4N4	Q8N0Y3	316 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	SLC44A1	Q8WWI5	657 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	EXTL1	Q92935	676 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	KIAA1191	Q96A73	305 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	FKBP10	Q96AY3	582 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	PYCR2	Q96C36	320 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CABS1	Q96KC9	395 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	OR2A5	Q96R48	311 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	PAFAH2	Q99487	392 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	CNOT10	Q9H9A5	744 aa	Known RBP	13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	STARD5	Q9NSY2	213 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	TLK1	Q9UKI8	766 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	TCFL5	Q9UL49	500 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	RNF112	Q9ULX5	631 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	POLH	Q9Y253	713 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	ACOT9	Q9Y305	439 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	DYRK1B	Q9Y463	629 aa		13.76	□□□□□ -0.21
NXF1-204	ENST00000527064	EXOC1L	A0A1B0GW35	172 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	CDC14C	A4D256	554 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	PRPF4	O43172	522 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	KRT38	O76015	456 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	CAPN1	P07384	714 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	LTA4H	P09960	611 aa	Known RBP	13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	NPPB	P16860	134 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	MSH2	P43246	934 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	CCR10	P46092	362 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	PMS2	P54278	862 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	RPS18	P62269	152 aa	Known RBP	13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	TBR1	Q16650	682 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	FAM83E	Q2M2I3	478 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	PRTG	Q2VWP7	1150 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	GARNL3	Q5VVW2	1013 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	THOC6	Q86W42	341 aa	Known RBP	13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	CNPY4	Q8N129	248 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	SPATA6L	Q8N4H0	392 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	ABHD11	Q8NFV4	315 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	STAG3L4	Q8TBR4	150 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	SLC5A11	Q8WWX8	675 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	THAP4	Q8WY91	577 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	RHBDF1	Q96CC6	855 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	MVB12A	Q96EY5	273 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	RUFY1	Q96T51	708 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	UNK	Q9C0B0	810 aa	Known RBP	13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	SNX15	Q9NRS6	342 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	WWOX	Q9NZC7	414 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	ZNF180	Q9UJW8	692 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	RALY	Q9UKM9	306 aa	Known RBP	13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	KCNE2	Q9Y6J6	123 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	FAM208B	Q5VWN6	2430 aa		13.75	□□□□□ -0.21
NXF1-204	ENST00000527064	CHD6	Q8TD26	2715 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	KCNE1B	A0A087WTH5	132 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	NCF1B	A6NI72	391 aa	Predicted RBP	13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	NCF1C	A8MVU1	366 aa	Predicted RBP	13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	ALB	P02768	609 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	SFTPC	P11686	197 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	NCF1	P14598	390 aa	Predicted RBP	13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	TYK2	P29597	1187 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	FOLR3	P41439	243 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	CSNK1G2	P78368	415 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	OR4D1	Q15615	310 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	NDUFA9	Q16795	377 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	DEFB109B	Q30KR1	87 aa		13.74	□□□□□ -0.21
NXF1-204	ENST00000527064	UBAP2	Q5T6F2	1119 aa	Known RBP	13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms