RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	CDH1	P12830	882 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	GDF5	P43026	501 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	CCR8	P51685	355 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	CSNK1G2	P78368	415 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	E2F2	Q14209	437 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	GPR19	Q15760	415 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	PDK4	Q16654	411 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	FOXR1	Q6PIV2	292 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	SLC22A9	Q8IVM8	553 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	PTGR2	Q8N8N7	351 aa	Predicted RBP	19.9	■□□□□ 0.78
CD44-222	ENST00000526025	USP7	Q93009	1102 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	CCDC126	Q96EE4	140 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	WDR34	Q96EX3	536 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	PITHD1	Q9GZP4	211 aa	Predicted RBP	19.9	■□□□□ 0.78
CD44-222	ENST00000526025	OPTC	Q9UBM4	332 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	SERTAD3	Q9UJW9	196 aa		19.9	■□□□□ 0.78
CD44-222	ENST00000526025	KCNE1B	A0A087WTH5	132 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	GOLGA6L10	A6NI86	522 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025		A8MT66	165 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	TMEM150C	B9EJG8	249 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	19.89	■□□□□ 0.77
CD44-222	ENST00000526025		H3BMH7	237 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025		H7BY64	318 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	SEC16A	O15027	2179 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	PLIN3	O60664	434 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	ATP5F1	P24539	256 aa	Predicted RBP	19.89	■□□□□ 0.77
CD44-222	ENST00000526025	GRK3	P35626	688 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	AGTR2	P50052	363 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	ITGA1	P56199	1179 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	RPS15A	P62244	130 aa	Known RBP	19.89	■□□□□ 0.77
CD44-222	ENST00000526025	TBC1D25	Q3MII6	688 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	TCTE1	Q5JU00	501 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	ATG9B	Q674R7	924 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	C16orf46	Q6P387	395 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	FBXO42	Q6P3S6	717 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	NXPE4	Q6UWF7	544 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	MCAT	Q8IVS2	390 aa	Known RBP	19.89	■□□□□ 0.77
CD44-222	ENST00000526025	N4BP2L2	Q92802	583 aa	Predicted RBP	19.89	■□□□□ 0.77
CD44-222	ENST00000526025	PRAP1	Q96NZ9	151 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	IQCG	Q9H095	443 aa	Known RBP	19.89	■□□□□ 0.77
CD44-222	ENST00000526025	APMAP	Q9HDC9	416 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	PLLP	Q9Y342	182 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	B3GALT1	Q9Y5Z6	326 aa		19.89	■□□□□ 0.77
CD44-222	ENST00000526025	ACACA	Q13085	2346 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	E2F3	O00716	465 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	CLGN	O14967	610 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	CCNT2	O60583	730 aa	Known RBP	19.88	■□□□□ 0.77
CD44-222	ENST00000526025	KATNA1	O75449	491 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	SLC5A2	P31639	672 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	CASP2	P42575	452 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	TBCC	Q15814	346 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	TLDC1	Q6P9B6	456 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	ZYG11A	Q6WRX3	759 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	SLCO4C1	Q6ZQN7	724 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	ADCK2	Q7Z695	626 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	GPR135	Q8IZ08	494 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	TBC1D19	Q8N5T2	526 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	SNX31	Q8N9S9	440 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	OR1L3	Q8NH93	324 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	OR2A5	Q96R48	311 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	SELENOS	Q9BQE4	189 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	COPG2	Q9UBF2	871 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	TMEM184B	Q9Y519	407 aa	Predicted RBP	19.88	■□□□□ 0.77
CD44-222	ENST00000526025	ASB1	Q9Y576	335 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	PCDHB3	Q9Y5E6	796 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	AP1M2	Q9Y6Q5	423 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	WDFY3	Q8IZQ1	3526 aa		19.88	■□□□□ 0.77
CD44-222	ENST00000526025	CHD8	Q9HCK8	2581 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	TRBC2	A0A5B9	178 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	AGRP	O00253	132 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	TYROBP	O43914	113 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	CAPNS1	P04632	268 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	RPS17	P08708	135 aa	Known RBP	19.87	■□□□□ 0.77
CD44-222	ENST00000526025	C1GALT1C1L	P0DN25	315 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	EPB42	P16452	691 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	EPOR	P19235	508 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	CXCR2	P25025	360 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	PRKAA2	P54646	552 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	EMP3	P54852	163 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	NAA20	P61599	178 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	HERVK_113	P63132	956 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	REEP5	Q00765	189 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	MAP7	Q14244	749 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	FBXO48	Q5FWF7	155 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	CATSPERE	Q5SY80	951 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	YOD1	Q5VVQ6	348 aa	Predicted RBP	19.87	■□□□□ 0.77
CD44-222	ENST00000526025	TMPRSS11B	Q86T26	416 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	EXOC3L1	Q86VI1	746 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	PMEPA1	Q969W9	287 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	ESAM	Q96AP7	390 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	AIF1L	Q9BQI0	150 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	ERVK-6	Q9BXR3	956 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	SPRY4	Q9C004	299 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	NT5DC2	Q9H857	520 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	TMBIM4	Q9HC24	238 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	FOXJ2	Q9P0K8	574 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	APC2	O95996	2303 aa		19.87	■□□□□ 0.77
CD44-222	ENST00000526025	UQCRHL	A0A096LP55	91 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	FITM1	A5D6W6	292 aa		19.86	■□□□□ 0.77
CD44-222	ENST00000526025	TMEM8B	A6NDV4	472 aa		19.86	■□□□□ 0.77

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