RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 RNF44Q7L0R7 432 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 KLHDC8BQ8IXV7 354 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 MMP21Q8N119 569 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 AGAP11Q8TF27 550 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 ASZ1Q8WWH4 475 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 C10orf90Q96M02 699 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 DMRTA2Q96SC8 542 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 MKKSQ9NPJ1 570 aaPredicted RBP13.2□□□□□ -0.3
SPCS3-204ENST00000513139 SLC39A10Q9ULF5 831 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 MKL2Q9ULH7 1088 aa13.2□□□□□ -0.3
SPCS3-204ENST00000513139 DNAJC13O75165 2243 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 LOC105369274A0A096LPK9 316 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 LOC102723532A0A0G2JNH3 316 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 A0A1B0GTL3 188 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 FAM227AF5H4B4 570 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 ASNA1O43681 348 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 GPC4O75487 556 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 STK10O94804 968 aaKnown RBP13.19□□□□□ -0.3
SPCS3-204ENST00000513139 ERVK-10P10266 1014 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 ABOP16442 354 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 SLC26A3P40879 764 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 NAA25Q14CX7 972 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 PRTGQ2VWP7 1150 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 H3F3CQ6NXT2 135 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 BBS12Q6ZW61 710 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 TAX1BP1Q86VP1 789 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 DOLPP1Q86YN1 238 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 OR4N4Q8N0Y3 316 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 MDS2Q8NDY4 140 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 HMGCLL1Q8TB92 370 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 SDCCAG3Q96C92 435 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 TRIM44Q96DX7 344 aaPredicted RBP13.19□□□□□ -0.3
SPCS3-204ENST00000513139 ZNF354BQ96LW1 612 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 IL17FQ96PD4 163 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 TMEM121Q9BTD3 319 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 CXXC4Q9H2H0 198 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 COQ3Q9NZJ6 369 aa13.19□□□□□ -0.3
SPCS3-204ENST00000513139 A0A0J9YVX5 310 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 GOLGA6L9A6NEM1 432 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 PHF2O75151 1096 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TSPAN12O95859 305 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 EIF2S1P05198 315 aaKnown RBP13.18□□□□□ -0.3
SPCS3-204ENST00000513139 CYC1P08574 325 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 MSNP26038 577 aaKnown RBP13.18□□□□□ -0.3
SPCS3-204ENST00000513139 EEF1DP29692 281 aaKnown RBP13.18□□□□□ -0.3
SPCS3-204ENST00000513139 CCR7P32248 378 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 CXCR5P32302 372 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 GNG11P61952 73 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 HSPA14Q0VDF9 509 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 ACER2Q5QJU3 275 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 PLAG1Q6DJT9 500 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TTC23LQ6PF05 361 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 MICALCLQ6ZW33 695 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TGIF2LYQ8IUE0 185 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 VRK3Q8IV63 474 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 SIAH3Q8IW03 269 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 GHDCQ8N2G8 530 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 AMER3Q8N944 861 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TMEM178AQ8NBL3 297 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 CHDHQ8NE62 594 aaPredicted RBP13.18□□□□□ -0.3
SPCS3-204ENST00000513139 OR2L3Q8NG85 312 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 RAD51AP1Q96B01 352 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 SCMH1Q96GD3 660 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 CABS1Q96KC9 395 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 SPATA13Q96N96 652 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 FRMD6Q96NE9 622 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TTC1Q99614 292 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 ZFYVE21Q9BQ24 234 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TRIM51Q9BSJ1 452 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TSSK1BQ9BXA7 367 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 OSBPL8Q9BZF1 889 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 C10orf88Q9H8K7 445 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 JRKLQ9Y4A0 524 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 MRFAP1Q9Y605 127 aa13.18□□□□□ -0.3
SPCS3-204ENST00000513139 NSD1Q96L73 2696 aaPredicted RBP13.18□□□□□ -0.3
SPCS3-204ENST00000513139 TCRBV7S2A1N4TA0A589 114 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 OR2A25A4D2G3 310 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 MROH6A6NGR9 719 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 NPIPA5E9PKD4 350 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 PRRG2O14669 202 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 ADAM10O14672 748 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 SLCO2B1O94956 709 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 CD46P15529 392 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 DNAJA1P31689 397 aaKnown RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 FOXN2P32314 431 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 CSE1LP55060 971 aaKnown RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 COPS2P61201 443 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 TUBA3CQ13748 450 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 SPARCL1Q14515 664 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 SWT1Q5T5J6 900 aaKnown RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 GARNL3Q5VVW2 1013 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 KCTD11Q693B1 232 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 TUBA3EQ6PEY2 450 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 NCCRP1Q6ZVX7 275 aaPredicted RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 CDKL3Q8IVW4 592 aaPredicted RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 CHERPQ8IWX8 916 aaKnown RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 BEST3Q8N1M1 668 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 RAB42Q8N4Z0 105 aa13.17□□□□□ -0.3
SPCS3-204ENST00000513139 FAM98AQ8NCA5 519 aaKnown RBP13.17□□□□□ -0.3
SPCS3-204ENST00000513139 OR2A1Q8NGT9 310 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms