RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 UNC50Q53HI1 259 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ZNF678Q5SXM1 525 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ZNF425Q6IV72 752 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 NXPE4Q6UWF7 544 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 SLCO4C1Q6ZQN7 724 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 PAQR7Q86WK9 346 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 MYLK4Q86YV6 388 aaPredicted RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 CACTIN-AS1Q8N1I8 211 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 D2HGDHQ8N465 521 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 WDR36Q8NI36 951 aaKnown RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 ATP6V1E2Q96A05 226 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ZUFSPQ96AP4 578 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CCDC126Q96EE4 140 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 OR6C1Q96RD1 312 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CTRCQ99895 268 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 SCNM1Q9BWG6 230 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ERVK-6Q9BXR3 956 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 CAPS2Q9BXY5 557 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 NOL11Q9H8H0 719 aaKnown RBP11.42□□□□□ -0.58
CUX1-210ENST00000497815 IPPKQ9H8X2 491 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ACTR8Q9H981 624 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 TMEM184CQ9NVA4 438 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 OXSMQ9NWU1 459 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 IRAK4Q9NWZ3 460 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 NKIRAS1Q9NYS0 192 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 GPRC5BQ9NZH0 403 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 ANKMY1Q9P2S6 941 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 BTRCQ9Y297 605 aa11.42□□□□□ -0.58
CUX1-210ENST00000497815 PCNX2A6NKB5 2137 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 SPEGQ15772 3267 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 OR2A25A4D2G3 310 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 TMEM150CB9EJG8 249 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 PRAMEF4O60810 478 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 H2AFYO75367 372 aaKnown RBP11.41□□□□□ -0.58
CUX1-210ENST00000497815 STATHP02808 62 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 EIF2S1P05198 315 aaKnown RBP11.41□□□□□ -0.58
CUX1-210ENST00000497815 BPGMP07738 259 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 CTSBP07858 339 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 C1GALT1C1LP0DN25 315 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 HRH2P25021 359 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 GRK3P35626 688 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 ETV5P41161 510 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 ETV4P43268 484 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 SERPINB4P48594 390 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 PIK3CGP48736 1102 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 NAGLUP54802 743 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 GABREP78334 506 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 IRF8Q02556 426 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 CHIT1Q13231 466 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 DOC2AQ14183 400 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 SLBPQ14493 270 aaKnown RBP eCLIP11.41□□□□□ -0.58
CUX1-210ENST00000497815 CFAP157Q5JU67 520 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 HHATQ5VTY9 493 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 PRAMEF9Q5VWM5 478 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 LIPMQ5VYY2 423 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 FRMPD2BQ6IN97 320 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 MCATQ8IVS2 390 aaKnown RBP11.41□□□□□ -0.58
CUX1-210ENST00000497815 DNAJC22Q8N4W6 341 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 ZNF740Q8NDX6 193 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 ABHD11Q8NFV4 315 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 TRPC4APQ8TEL6 797 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 ZNF483Q8TF39 744 aaPredicted RBP11.41□□□□□ -0.58
CUX1-210ENST00000497815 SLC39A7Q92504 469 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 GRAMD1AQ96CP6 724 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 L3HYPDHQ96EM0 354 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 CDK15Q96Q40 435 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 ZFYVE21Q9BQ24 234 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 SPNS1Q9H2V7 528 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 PELI2Q9HAT8 420 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 APMAPQ9HDC9 416 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 PRM3Q9NNZ6 103 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 FGF21Q9NSA1 209 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 SIDT1Q9NXL6 827 aaKnown RBP11.41□□□□□ -0.58
CUX1-210ENST00000497815 SLC39A1Q9NY26 324 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 KLK4Q9Y5K2 254 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 PIEZO1Q92508 2521 aa11.41□□□□□ -0.58
CUX1-210ENST00000497815 LOC105369274A0A096LPK9 316 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 LOC102723532A0A0G2JNH3 316 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 PPP6CO00743 305 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 OR7A17O14581 309 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 ATP8B1O43520 1251 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 OR1F1O43749 312 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 TRIM13O60858 407 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 NEFHP12036 1026 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 EZRP15311 586 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 BCL6P41182 706 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 CCR10P46092 362 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 CCNG1P51959 295 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 VSX2P58304 361 aaPredicted RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 DNAJB13P59910 316 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 MC2RQ01718 297 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 ACY1Q03154 408 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 CLCQ05315 142 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 EIF3IQ13347 325 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 RBBP5Q15291 538 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 HSP90B2PQ58FF3 399 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 ZC3H12BQ5HYM0 836 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 ATG9BQ674R7 924 aa11.4□□□□□ -0.58
CUX1-210ENST00000497815 METTL2BQ6P1Q9 378 aaKnown RBP11.4□□□□□ -0.58
CUX1-210ENST00000497815 FBXO42Q6P3S6 717 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms