RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 LINC00303Q3SY05 128 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 PTPN20Q4JDL3 420 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 CARD16Q5EG05 197 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 KIAA1161Q6NSJ0 714 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 C22orf39Q6P5X5 142 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 ZNF782Q6ZMW2 699 aaPredicted RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 RBM44Q6ZP01 1051 aaKnown RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 DCDC5Q6ZRR9 648 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 TFAP2DQ7Z6R9 452 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 SETD3Q86TU7 594 aaPredicted RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 PARGQ86W56 976 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 RBFAQ8N0V3 343 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 C17orf53Q8N3J3 647 aaPredicted RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 ARL14Q8N4G2 192 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 DCAF4L2Q8NA75 395 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 MSANTD4Q8NCY6 345 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 WDR36Q8NI36 951 aaKnown RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 ZNF653Q96CK0 615 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 ARHGEF26Q96DR7 871 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 PPP1R16AQ96I34 528 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 RITA1Q96K30 269 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 CCNL2Q96S94 520 aaPredicted RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 NPY6RQ99463 290 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 IL12RB2Q99665 862 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 ARPC5LQ9BPX5 153 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 CCDC3Q9BQI4 270 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 CINPQ9BW66 212 aaPredicted RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 THAP2Q9H0W7 228 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 LZTFL1Q9NQ48 299 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 PIGVQ9NUD9 493 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 ARHGEF38Q9NXL2 777 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 MPP6Q9NZW5 540 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 LRFN1Q9P244 771 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 TRIM10Q9UDY6 481 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 CNOT8Q9UFF9 292 aaKnown RBP6.38□□□□□ -1.39
VIM-207ENST00000495528 NENFQ9UMX5 172 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 GUCA1BQ9UMX6 200 aa6.38□□□□□ -1.39
VIM-207ENST00000495528 TDRD6O60522 2096 aaKnown RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 CCDC187A0A096LP49 1063 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 USP27XA6NNY8 438 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 H7C1Q1 480 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CLIC1O00299 241 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 NTN3O00634 580 aaPredicted RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 BUB1O43683 1085 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 DAB1O75553 588 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 SKAP2O75563 359 aaPredicted RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 TCEA3O75764 348 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 ZMPSTE24O75844 475 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CD160O95971 181 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CALB1P05937 261 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 KRT3P12035 628 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 NPPBP16860 134 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 OR1E1P30953 314 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CXCR3P49682 368 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 DNA2P51530 1060 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CCNHP51946 323 aaPredicted RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 ALDH18A1P54886 795 aaKnown RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 ARF5P84085 180 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 SRSF6Q13247 344 aaKnown RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 SGCGQ13326 291 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 MTA1Q13330 715 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 DNASE1L3Q13609 305 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 TGIF1Q15583 401 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 BRMS1LQ5PSV4 323 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CCDC144NLQ6NUI1 221 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 PPP1R2P3Q6NXS1 205 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 TLDC1Q6P9B6 456 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 MON1BQ7L1V2 547 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 SLC26A9Q7LBE3 791 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 SLC35F3Q8IY50 421 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 KIAA1524Q8TCG1 905 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 ADAMTS18Q8TE60 1221 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CTNNBL1Q8WYA6 563 aaPredicted RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 VOPP1Q96AW1 172 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CENPTQ96BT3 561 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 C1orf74Q96LT6 269 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 TRIM4Q9C037 500 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 CLPBQ9H078 707 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 SYNDIG1Q9H7V2 258 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 PARVAQ9NVD7 372 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.37□□□□□ -1.39
VIM-207ENST00000495528 NCKIPSDQ9NZQ3 722 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 SPASTQ9UBP0 616 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 APOBEC3BQ9UH17 382 aaKnown RBP6.37□□□□□ -1.39
VIM-207ENST00000495528 IL17BQ9UHF5 180 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 ITM2BQ9Y287 266 aa6.37□□□□□ -1.39
VIM-207ENST00000495528 ATMQ13315 3056 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 TENM4Q6N022 2769 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 IGLV3-10A0A075B6K4 115 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 ILVBLA1L0T0 632 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 MACROD2A1Z1Q3 448 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 SIGLEC16A6NMB1 481 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 C16orf96A6NNT2 1141 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 TMEM110-MUSTN1A8MSY1 372 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 LMO7DNF2Z398 122 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 POC1B-GALNT4F8VUJ3 575 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 FCHO1O14526 889 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 DNPH1O43598 174 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 KRT86O43790 486 aa6.36□□□□□ -1.39
VIM-207ENST00000495528 CYP1A2P05177 515 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms