RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MROQ9BYG7 248 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RHBGQ9H310 441 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF556Q9HAH1 456 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IL26Q9NPH9 171 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 THG1LQ9NWX6 298 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF646O15015 1829 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PLXNB2O15031 1838 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LOC730098B7Z3J9 87 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLC22A3O75751 556 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CD1DP15813 335 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MYF6P23409 242 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAPK9P45984 424 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLC15A1P46059 708 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BDKRB1P46663 353 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LIPEQ05469 1076 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NFATC2Q13469 925 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GPRC6AQ5T6X5 926 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 AGAP7PQ5VUJ5 663 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CES5AQ6NT32 575 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF549Q6P9A3 640 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 NUDT18Q6ZVK8 323 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 AHSA2Q719I0 299 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MED30Q96HR3 178 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SMAD5Q99717 465 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 LHPPQ9H008 270 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CWH43Q9H720 699 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCNB1IP1Q9NPC3 277 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SPHK2Q9NRA0 654 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FARSBQ9NSD9 589 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 EXD2Q9NVH0 621 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PEX16Q9Y5Y5 336 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BACE2Q9Y5Z0 518 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 H3BM21 787 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMEM189-UBE2V1I3L0A0 370 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PLOD2O00469 737 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BCKDKO14874 412 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ESR1P03372 595 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CYP2A6P11509 494 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SRCP12931 536 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KRT20P35900 424 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCR2P41597 374 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IDH2P48735 452 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DAG1Q14118 895 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF404Q494X3 552 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 UNC50Q53HI1 259 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CCDC157Q569K6 752 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CYP20A1Q6UW02 462 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMEM207Q6UWW9 146 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MAVSQ7Z434 540 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ASZ1Q8WWH4 475 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 COL26A1Q96A83 441 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TMCO6Q96DC7 493 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OR52E6Q96RD3 313 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KLF16Q9BXK1 252 aaPredicted RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TRIT1Q9H3H1 467 aaKnown RBP10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 POLG2Q9UHN1 485 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 INVSQ9Y283 1065 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HSPB11Q9Y547 144 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PRSS21Q9Y6M0 314 aa10.45□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PRSS51A0A1B0GVH4 220 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SDHDO14521 159 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CATP04040 527 aaKnown RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 COX7A2P14406 83 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CEBPBP17676 345 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CD247P20963 164 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 HOXC8P31273 242 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 S100A3P33764 101 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PPP5CP53041 499 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 C5orf22Q49AR2 442 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ZNF678Q5SXM1 525 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TRIM48Q8IWZ4 208 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DEFB119Q8N690 84 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GPR26Q8NDV2 337 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TFAP2CQ92754 450 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 IGSF5Q9NSI5 407 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CLCA2Q9UQC9 943 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TESMINQ9Y4I5 508 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DNAJC15Q9Y5T4 150 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PIPSLA2A3N6 862 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ADH1CP00326 375 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 OTCP00480 354 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 CTSAP10619 480 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 POU1F1P28069 291 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PTCHD3Q3KNS1 767 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 RBM38Q9H0Z9 239 aaKnown RBP10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TNFRSF12AQ9NP84 129 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 FZD3Q9NPG1 666 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 TREX1Q9NSU2 369 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ING4Q9UNL4 249 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 B4GAT1O43505 415 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 MLYCDO95822 493 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ANXA6P08133 673 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 ADH5P11766 374 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 BMPR1AP36894 532 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 SLC6A11P48066 632 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 PRIM2P49643 509 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 DGKEP52429 567 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 GPNMBQ14956 572 aa10.44□□□□□ -0.74
MSH5-SAPCD1-207ENST00000493662 UAP1L1Q3KQV9 507 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms