RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 CLMPQ9H6B4 373 aa9.1□□□□□ -0.95
SF3B1-211ENST00000487698 PPT2Q9UMR5 302 aa9.1□□□□□ -0.95
SF3B1-211ENST00000487698 POMPQ9Y244 141 aa9.1□□□□□ -0.95
SF3B1-211ENST00000487698 MDC1Q14676 2089 aaKnown RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 PRAMEF33A0A0G2JMD5 474 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CCDC154A6NI56 674 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 METTL12A8MUP2 240 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 PRICKLE3O43900 615 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 RASGRP1O95267 797 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 THEGLP0DJG4 465 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 PCNAP12004 261 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 F3P13726 295 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 TACR1P25103 407 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 NDUFS1P28331 727 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 PIK3CBP42338 1070 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 PXNP49023 591 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CLDN8P56748 225 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 MEF2AQ02078 507 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 FOXM1Q08050 763 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 DDX39BQ13838 428 aaKnown RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 PAGE3Q5JUK9 113 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 C1orf146Q5VVC0 180 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 SLC30A9Q6PML9 568 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 VN1R5Q7Z5H4 357 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 FAM9CQ8IZT9 166 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 MINDY1Q8N5J2 469 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 DPP10Q8N608 796 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 ENDOVQ8N8Q3 282 aaKnown RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 GLB1L3Q8NCI6 653 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 ZNF740Q8NDX6 193 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CADM4Q8NFZ8 388 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 OR4K1Q8NGD4 311 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 OR2A1Q8NGT9 310 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 NUDT8Q8WV74 236 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 UBE2E3Q969T4 207 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CCDC124Q96CT7 223 aaKnown RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 APOLD1Q96LR9 279 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 SLC6A18Q96N87 628 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 SERPINI1Q99574 410 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 ACAT2Q9BWD1 397 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 TWSG1Q9GZX9 223 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 XKR8Q9H6D3 395 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CAAP1Q9H8G2 361 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 SPAG4Q9NPE6 437 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 DMRT3Q9NQL9 472 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CUEDC1Q9NWM3 386 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 ZNF624Q9P2J8 865 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 ABCD2Q9UBJ2 740 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 KLF15Q9UIH9 416 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 LEF1Q9UJU2 399 aaPredicted RBP9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CROTQ9UKG9 612 aa9.09□□□□□ -0.95
SF3B1-211ENST00000487698 CFLARO15519 480 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 RPS13P62277 151 aaKnown RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 REEP5Q00765 189 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 ILF3Q12906 894 aaKnown RBP eCLIP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 HIST2H2ACQ16777 129 aaPredicted RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 C6orf163Q5TEZ5 329 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 ICE2Q659A1 982 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 HIST2H2AA3Q6FI13 130 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 NOXRED1Q6NXP6 359 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 LAYNQ6UX15 382 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 TMIGD1Q6UXZ0 262 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 RIMKLAQ8IXN7 391 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 KRTCAP2Q8N6L1 136 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 SNX19Q92543 992 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 TMEM74Q96NL1 305 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 HOPXQ9BPY8 73 aaPredicted RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 SLC39A3Q9BRY0 314 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 DPY30Q9C005 99 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 ZMYND15Q9H091 742 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 TCEAL2Q9H3H9 227 aaPredicted RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 RNPEPL1Q9HAU8 725 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 SIRT5Q9NXA8 310 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 TMEM181Q9P2C4 612 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 THEGQ9P2T0 379 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 PACSIN3Q9UKS6 424 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 RUVBL1Q9Y265 456 aaKnown RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 COLEC10Q9Y6Z7 277 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 CACNA1IQ9P0X4 2223 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 IGKV1-8A0A0C4DH67 115 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 K7ESF4 209 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 KDM1AO60341 852 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 TNFP01375 233 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 SLC6A2P23975 617 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 CD27P26842 260 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 PEBP1P30086 187 aaKnown RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 DGKQP52824 942 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 C21orf58P58505 322 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 RAE1P78406 368 aaKnown RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 PRDX1Q06830 199 aaKnown RBP9.08□□□□□ -0.96
SF3B1-211ENST00000487698 ACSM2AQ08AH3 577 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 KRT33BQ14525 404 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 TCEA2Q15560 299 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 SPIN4Q56A73 249 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 ACSM2BQ68CK6 577 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 PRMT9Q6P2P2 845 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 GALNT18Q6P9A2 607 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 KRT78Q8N1N4 520 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 CLHC1Q8NHS4 586 aa9.08□□□□□ -0.96
SF3B1-211ENST00000487698 CHTF18Q8WVB6 975 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms