RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 IL18R1Q13478 541 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 ACOX1Q15067 660 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 RFX4Q33E94 735 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 RBM48Q5RL73 367 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 SYT12Q8IV01 421 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 ERI1Q8IV48 349 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 FAM86B1Q8N7N1 296 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 NAT16Q8N8M0 369 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF420Q8TAQ5 688 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 MRPL38Q96DV4 380 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 TSSK3Q96PN8 268 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 ATG10Q9H0Y0 220 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 TIMMDC1Q9NPL8 285 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 OBP2AQ9NY56 170 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 GPR34Q9UPC5 381 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 C1orf105O95561 183 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 CST1P01037 141 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 JUNBP17275 347 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 CDKN2CP42773 168 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 ESRRGP62508 458 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 HNRNPA1L2Q32P51 320 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 GCNT7Q6ZNI0 430 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 HIPK1Q86Z02 1210 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 NMD3Q96D46 503 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 LRRC3BQ96PB8 259 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 DOK1Q99704 481 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 SGPP1Q9BX95 441 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 IFT80Q9P2H3 777 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 EME2A4GXA9 379 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 EVPLLA8MZ36 301 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 SCAMP2O15127 329 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 PRKD3O94806 890 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 NFATC1O95644 943 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 ETS2P15036 469 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 RPS6KA3P51812 740 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 VEZF1Q14119 521 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 GAB4Q2WGN9 574 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 C9orf64Q5T6V5 341 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 TMEM214Q6NUQ4 689 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 TMEM220Q6QAJ8 160 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 XKR5Q6UX68 686 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 SLCO4C1Q6ZQN7 724 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 LAS2Q8IYD9 372 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 OR8D1Q8WZ84 308 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 COQ8BQ96D53 544 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 MPP4Q96JB8 637 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 NPLQ9BXD5 320 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 DPEP2Q9H4A9 486 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 HPS4Q9NQG7 708 aa11.81□□□□□ -0.52
PTPRF-212ENST00000477970 MRPS23Q9Y3D9 190 aaKnown RBP11.81□□□□□ -0.52
PTPRF-212ENST00000477970 TRIM64BA6NI03 449 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 H3BSA7 217 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 CPNE6O95741 557 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 CALRP27797 417 aaKnown RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 GABARAPL2P60520 117 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 RAE1P78406 368 aaKnown RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 PGS1Q32NB8 556 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ANXA8L1Q5VT79 327 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 C12orf40Q86WS4 652 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 PHACTR4Q8IZ21 702 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 CHPFQ8IZ52 775 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 VN1R2Q8NFZ6 395 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 FBXO30Q8TB52 745 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 NETO1Q8TDF5 533 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 DTNBP1Q96EV8 351 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 PPP1R16AQ96I34 528 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 REXO4Q9GZR2 422 aaKnown RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ITM2CQ9NQX7 267 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 GULP1Q9UBP9 304 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 CHD9Q3L8U1 2897 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 VEGFDO43915 354 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 SERPINA1P01009 418 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 SLC5A2P31639 672 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 IRS1P35568 1242 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 GPM6BQ13491 265 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 NAE1Q13564 534 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 OR4F3Q6IEY1 312 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 GPR141Q7Z602 305 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 LRRC56Q8IYG6 542 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ZZZ3Q8IYH5 903 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 MAFAQ8NHW3 353 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 HDAC2Q92769 488 aaKnown RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 NUS1Q96E22 293 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 MBOAT4Q96T53 435 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 EFCAB11Q9BUY7 163 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 CHST8Q9H2A9 424 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ATP6V1HQ9UI12 483 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 RPS6KA6Q9UK32 745 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 KCNE2Q9Y6J6 123 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 H3BM21 787 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 FPGTO14772 594 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 EPN2O95208 641 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 PLIN5Q00G26 463 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ACSM2AQ08AH3 577 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 LAPTM5Q13571 262 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ELAVL3Q14576 367 aaKnown RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 SLC44A4Q53GD3 710 aa11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ZNF648Q5T619 568 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-212ENST00000477970 ACSM2BQ68CK6 577 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms