RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SHQ1Q6PI26 577 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CORO6Q6QEF8 472 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 FIP1L1Q6UN15 594 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 NUP54Q7Z3B4 507 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ARHGAP22Q7Z5H3 698 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CFAP206Q8IYR0 622 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ANKRD13CQ8N6S4 541 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 NPEPL1Q8NDH3 523 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 GOT1L1Q8NHS2 421 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 SETD6Q8TBK2 473 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 HSD17B8Q92506 261 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ARHGAP45Q92619 1136 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 SYN2Q92777 582 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 MOB3AQ96BX8 217 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 DHX58Q96C10 678 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 KRT12Q99456 494 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 MGME1Q9BQP7 344 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 FUCA2Q9BTY2 467 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 KATNB1Q9BVA0 655 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 DGCR6LQ9BY27 220 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 UPF3AQ9H1J1 476 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 S1PR5Q9H228 398 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 PANK3Q9H999 370 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 ZNF701Q9NV72 531 aaPredicted RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 INTS9Q9NV88 658 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 TBC1D7Q9P0N9 293 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 CPSF3Q9UKF6 684 aaKnown RBP2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 MAN1B1Q9UKM7 699 aa2.64□□□□□ -1.99
CCDC88A-212ENST00000474059 A0A1W2PN81 502 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 MSGN1A6NI15 193 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 ATP6V0E1O15342 81 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 AP5Z1O43299 807 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 PRKRAO75569 313 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 PIGNO95427 931 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 CSN3P07498 182 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 PDGFRAP16234 1089 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 JAK1P23458 1154 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 RBMS1P29558 406 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 PTGER4P35408 488 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 CHRNA7P36544 502 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 CAPZA1P52907 286 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 B3GALT5-AS1P59052 145 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 RBP5P82980 135 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 LGALS3BPQ08380 585 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 ZNF415Q09FC8 603 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 BFSP1Q12934 665 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 E2F5Q15329 346 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 MCMDC2Q4G0Z9 681 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 MPP7Q5T2T1 576 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 C11orf63Q6NUN7 778 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 PET117Q6UWS5 81 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 TLK2Q86UE8 772 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 TMEM139Q8IV31 216 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 OR8H3Q8N146 312 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 SLC39A11Q8N1S5 342 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 THAP8Q8NA92 274 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 OR1J1Q8NGS3 322 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 DEPDC1BQ8WUY9 529 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 CCDC107Q8WV48 283 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 GTF3AQ92664 365 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 SPAG5Q96R06 1193 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 RAD9AQ99638 391 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 THUMPD3Q9BV44 507 aaKnown RBP2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 ZWILCHQ9H900 591 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 GRPEL1Q9HAV7 217 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 A4GALTQ9NPC4 353 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 FRMD4AQ9P2Q2 1039 aaPredicted RBP2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 POLLQ9UGP5 575 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 GTF3C4Q9UKN8 822 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 RARRES3Q9UL19 164 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 WDR37Q9Y2I8 494 aa2.63□□□□□ -1.99
CCDC88A-212ENST00000474059 TRAV34A0A0B4J273 112 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 A0A1W2PPK0 400 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ARHGEF37A1IGU5 675 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 WDR46O15213 610 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 RNASEH1O60930 286 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 GBAP04062 536 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 RPN1P04843 607 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 SAGP10523 405 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 HAPLN1P10915 354 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 HSPA8P11142 646 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 TCF4P15884 667 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 PRKCIP41743 596 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 CRKLP46109 303 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 UBASH3AP57075 661 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 GSDMDP57764 484 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ELAVL2Q12926 359 aaKnown RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 CUL3Q13618 768 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ITGA7Q13683 1181 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 VEZF1Q14119 521 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 CA9Q16790 459 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ITPRIPL2Q3MIP1 535 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 UGT3A2Q3SY77 523 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 SPDYCQ5MJ68 293 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 DCAF10Q5QP82 559 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ELFN2Q5R3F8 820 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 C1QTNF12Q5T7M4 302 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 C11orf57Q6ZUT1 292 aaPredicted RBP2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 SPATA19Q7Z5L4 167 aa2.62□□□□□ -1.99
CCDC88A-212ENST00000474059 ABI3BPQ7Z7G0 1075 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms