RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 OR7G3Q8NG95 312 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ZNF420Q8TAQ5 688 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 ING5Q8WYH8 240 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ZNF707Q96C28 371 aaPredicted RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 DTNBP1Q96EV8 351 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 SMURF2Q9HAU4 748 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 GULP1Q9UBP9 304 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 MAGEB17A8MXT2 336 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 H3BM21 787 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 SPINT1O43278 529 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 KCNK5O95279 499 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 C1orf105O95561 183 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 SOD1P00441 154 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ENGP17813 658 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ITGB7P26010 798 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 IRS1P35568 1242 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 BDKRB1P46663 353 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ELP6Q0PNE2 266 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 SLC14A1Q13336 389 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 VMACQ2NL98 169 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 RFX4Q33E94 735 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 SPIN4Q56A73 249 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ZC3H12BQ5HYM0 836 aaKnown RBP14.57□□□□□ -0.08
LDLR-202ENST00000455727 TMEM240Q5SV17 173 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ETFBKMTQ8IXQ9 262 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ZNF366Q8N895 744 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 TERB1Q8NA31 727 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 CHTF18Q8WVB6 975 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 WDR34Q96EX3 536 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 MBOAT4Q96T53 435 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 SPATA9Q9BWV2 254 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ING2Q9H160 280 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 BTNL2Q9UIR0 455 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 C3orf18Q9UK00 162 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 ITM2BQ9Y287 266 aa14.57□□□□□ -0.08
LDLR-202ENST00000455727 MYO7AQ13402 2215 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 KIAA0100Q14667 2235 aaKnown RBP14.56□□□□□ -0.08
LDLR-202ENST00000455727 C5orf67F2Z3F1 127 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 SCAMP2O15127 329 aaKnown RBP14.56□□□□□ -0.08
LDLR-202ENST00000455727 LILRB5O75023 590 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 PDHA2P29803 388 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 SHMT2P34897 504 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 RAE1P78406 368 aaKnown RBP14.56□□□□□ -0.08
LDLR-202ENST00000455727 FPGSQ05932 587 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 ZNF773Q6PK81 442 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 SPESP1Q6UW49 350 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 SLCO4C1Q6ZQN7 724 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 C12orf40Q86WS4 652 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 CLVS1Q8IUQ0 354 aaPredicted RBP14.56□□□□□ -0.08
LDLR-202ENST00000455727 CHPFQ8IZ52 775 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 CPA6Q8N4T0 437 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 PHOSPHO2Q8TCD6 241 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 HDAC2Q92769 488 aaKnown RBP14.56□□□□□ -0.08
LDLR-202ENST00000455727 ISOC1Q96CN7 298 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 REPS1Q96D71 796 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 DOK1Q99704 481 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 WRAP53Q9BUR4 548 aaKnown RBP14.56□□□□□ -0.08
LDLR-202ENST00000455727 CXorf21Q9HAI6 301 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 SIRT5Q9NXA8 310 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 RPS6KA6Q9UK32 745 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 PCDHB11Q9Y5F2 797 aa14.56□□□□□ -0.08
LDLR-202ENST00000455727 CPNE6O95741 557 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 JUNBP17275 347 aaPredicted RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 LRRC74AQ0VAA2 488 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 PMS2P3Q13401 168 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 LAPTM5Q13571 262 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 DDX39BQ13838 428 aaKnown RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 VEZF1Q14119 521 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZNF697Q5TEC3 545 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZCCHC8Q6NZY4 707 aaKnown RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 GALNT18Q6P9A2 607 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 SHQ1Q6PI26 577 aaKnown RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 FBXO46Q6PJ61 603 aaPredicted RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZNF621Q6ZSS3 439 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 KCTD8Q6ZWB6 473 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZDHHC21Q8IVQ6 265 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZZZ3Q8IYH5 903 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 VN1R2Q8NFZ6 395 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 HUS1BQ8NHY5 278 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 FOXJ1Q92949 421 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 COQ8BQ96D53 544 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ZNF514Q96K75 400 aaPredicted RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 LINC00615Q96LM1 132 aaPredicted RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 DUSP26Q9BV47 211 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 AMBRA1Q9C0C7 1298 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 IL1RAPQ9NPH3 570 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ERVK-11Q9UQG0 969 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 AP1M2Q9Y6Q5 423 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 KIAA1549LQ6ZVL6 1849 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 DENND4AQ7Z401 1863 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 C17orf113A0A1B0GUU1 675 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ANKRD33BA6NCL7 494 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 E2F6O75461 281 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ETHE1O95571 254 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 PPIBP23284 216 aaKnown RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 DCKP27707 260 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 ELK4P28324 431 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 DPTQ07507 201 aa14.55□□□□□ -0.08
LDLR-202ENST00000455727 HNRNPA1L2Q32P51 320 aaKnown RBP14.55□□□□□ -0.08
LDLR-202ENST00000455727 TCEAL5Q5H9L2 206 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms