RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	AFTPH	Q6ULP2	937 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	PAQR7	Q86WK9	346 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	KRT222	Q8N1A0	295 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	OR4L1	Q8NH43	312 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	MMAB	Q96EY8	250 aa	Predicted RBP	13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	ZNF354B	Q96LW1	612 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	OR2A5	Q96R48	311 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	PLCD4	Q9BRC7	762 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	YIPF2	Q9BWQ6	316 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	HES7	Q9BYE0	225 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	NPIPA1	Q9UND3	350 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	ASB1	Q9Y576	335 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	PCDHA3	Q9Y5H8	950 aa		13.62	□□□□□ -0.23
HMGN1-208	ENST00000443046	HRNR	Q86YZ3	2850 aa	Predicted RBP	13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046		A0A0U1RQJ8	604 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	MACROD2	A1Z1Q3	448 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	FAM221A	A4D161	298 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046		A8MUI8	341 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	FAM227A	F5H4B4	570 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	PSMD3	O43242	534 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	MFAP3L	O75121	409 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	ERG	P11308	486 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	BDKRB1	P46663	353 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	RELA	Q04206	551 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	FAM53B	Q14153	422 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	FASTK	Q14296	549 aa	Known RBP	13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	TSTD2	Q5T7W7	516 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	CPEB2	Q7Z5Q1	589 aa	Known RBP	13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	FGD2	Q7Z6J4	655 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	CSNK1A1L	Q8N752	337 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	ZNF778	Q96MU6	729 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	CYTH2	Q99418	400 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	VN1R1	Q9GZP7	353 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	P2RY12	Q9H244	342 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	SPATA7	Q9P0W8	599 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	TTC7A	Q9ULT0	858 aa	Predicted RBP	13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046	MRFAP1	Q9Y605	127 aa		13.61	□□□□□ -0.23
HMGN1-208	ENST00000443046		A0A0A6YYC8	382 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	IGHV3-20	A0A0C4DH32	117 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046		I3L1I5	382 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	PRMT5	O14744	637 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	ZNHIT1	O43257	154 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	VPS26A	O75436	327 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	SEC24D	O94855	1032 aa	Predicted RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	MATN4	O95460	622 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	ANXA5	P08758	320 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	CTNNA2	P26232	953 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	EEF1D	P29692	281 aa	Known RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	CMPK1	P30085	196 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	CCNF	P41002	786 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	ART1	P52961	327 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	SNRPN	P63162	240 aa	Known RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	OR1C1	Q15619	314 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	P3H1	Q32P28	736 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	FCRLB	Q6BAA4	426 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	SPINK14	Q6IE38	97 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	ZNF425	Q6IV72	752 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	LINC00523	Q86TU6	105 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	CRLF3	Q8IUI8	442 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	SHISA5	Q8N114	240 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	GHDC	Q8N2G8	530 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	RAB42	Q8N4Z0	105 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	FAM71D	Q8N9W8	422 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	OR52K1	Q8NGK4	314 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	CA5BP1	Q8WTZ4	195 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	DRC3	Q9H069	523 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	KLHL1	Q9NR64	748 aa		13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	FLNA	P21333	2647 aa	Known RBP	13.6	□□□□□ -0.23
HMGN1-208	ENST00000443046	ABCA4	P78363	2273 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	GOLGA6L19	H0YKK7	550 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	MAN1A2	O60476	641 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	NEURL1	O76050	574 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	TJP3	O95049	919 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	TPM3	P06753	285 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	SP1	P08047	785 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	CD99	P14209	185 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	ABO	P16442	354 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	PPARG	P37231	505 aa	Predicted RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	MAGEA1	P43355	309 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	GDF10	P55107	478 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	MAT1A	Q00266	395 aa	Known RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	HSF1	Q00613	529 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	TFF3	Q07654	80 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	CDH17	Q12864	832 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	GBX1	Q14549	363 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	TMED2	Q15363	201 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	MEP1A	Q16819	746 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	BTBD16	Q32M84	506 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	FASTKD1	Q53R41	847 aa	Known RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	RNFT1	Q5M7Z0	435 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	AADACL2	Q6P093	401 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	LANCL3	Q6ZV70	420 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	LDB1	Q86U70	411 aa	Predicted RBP	13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	VSTM4	Q8IW00	320 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	TMEM178A	Q8NBL3	297 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	M1AP	Q8TC57	530 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	METTL21A	Q8WXB1	218 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	SDCCAG3	Q96C92	435 aa		13.59	□□□□□ -0.23
HMGN1-208	ENST00000443046	UTP23	Q9BRU9	249 aa	Known RBP	13.59	□□□□□ -0.23

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