RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 KAT8Q9H7Z6 458 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 CXorf21Q9HAI6 301 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 PRDM8Q9NQV8 689 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 DEC1Q9P2X7 70 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 DMTF1Q9Y222 760 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 TDRKHQ9Y2W6 561 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 NINQ8N4C6 2090 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 NUP210Q8TEM1 1887 aaPredicted RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 PABPN1LA6NDY0 278 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 MAGEB17A8MXT2 336 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 ARNTLO00327 626 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 RFXANKO14593 260 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 PRSS23O95084 383 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 ATE1O95260 518 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 FGF19O95750 216 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 ELFN1P0C7U0 828 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 RAP2AP10114 183 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 LAMP1P11279 417 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 TNFRSF1BP20333 461 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 MSH3P20585 1137 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 MYF6P23409 242 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 CAPGP40121 348 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 FOXM1Q08050 763 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 ADAM15Q13444 863 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 FGD3Q5JSP0 725 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 TMEM220Q6QAJ8 160 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 ZNF554Q86TJ5 538 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 METTL3Q86U44 580 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 PROSER1Q86XN7 944 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 MMAAQ8IVH4 418 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 RASGEF1AQ8N9B8 481 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 MFSD2AQ8NA29 543 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 MCOLN3Q8TDD5 553 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 TSPEARQ8WU66 669 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 C12orf43Q96C57 262 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 ZNF641Q96N77 438 aaPredicted RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 PANX1Q96RD7 426 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 AMBRA1Q9C0C7 1298 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 REXO4Q9GZR2 422 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 CCDC90BQ9GZT6 254 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 PAIP1Q9H074 479 aaKnown RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 LMAN2LQ9H0V9 348 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 CLMPQ9H6B4 373 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 VNN3Q9NY84 501 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 IFT80Q9P2H3 777 aaPredicted RBP9.17□□□□□ -0.94
CUX1-206ENST00000437600 BDP1A6H8Y1 2624 aa9.17□□□□□ -0.94
CUX1-206ENST00000437600 A0A1W2PPW3 197 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 PRR23AA6NEV1 266 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 AGAP14A8MT82 685 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 ARHGEF33A8MVX0 844 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SLC28A1O00337 649 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 XPNPEP2O43895 674 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 PEX14O75381 377 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 ADH1CP00326 375 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 CDK4P11802 303 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 CDH1P12830 882 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 TPD52P55327 224 aaPredicted RBP9.16□□□□□ -0.94
CUX1-206ENST00000437600 POLR2LP62875 67 aaKnown RBP9.16□□□□□ -0.94
CUX1-206ENST00000437600 RUNDC3AQ59EK9 446 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 CATSPEREQ5SY80 951 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 FRG2Q64ET8 278 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 NOXRED1Q6NXP6 359 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 XKR5Q6UX68 686 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 GPR141Q7Z602 305 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 GPR180Q86V85 440 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 CFAP206Q8IYR0 622 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SMARCD2Q92925 531 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 USP7Q93009 1102 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 CHFRQ96EP1 664 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 FRG2BQ96QU4 278 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 OR4K3Q96R72 315 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 LYSMD1Q96S90 227 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 RHNO1Q9BSD3 238 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 HAUS8Q9BT25 410 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SLC12A9Q9BXP2 914 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SH3BP4Q9P0V3 963 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 DPP7Q9UHL4 492 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 MAGEL2Q9UJ55 1249 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 COL4A3Q01955 1670 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SLC9A3R1O14745 358 aaPredicted RBP9.16□□□□□ -0.94
CUX1-206ENST00000437600 DEAF1O75398 565 aaPredicted RBP9.16□□□□□ -0.94
CUX1-206ENST00000437600 FKBP9O95302 570 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 ALPLP05186 524 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 IL6P05231 212 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 TFPTP0C1Z6 253 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 ACPPP15309 386 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 MATN1P21941 496 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 MC1RQ01726 317 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 DOC2AQ14183 400 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 STARD3Q14849 445 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 RAB39AQ14964 217 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 HKDC1Q2TB90 917 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 ABRAXAS1Q6UWZ7 409 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 FKBP9P1Q75LS8 142 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SYT12Q8IV01 421 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 ZNF740Q8NDX6 193 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 OR4K1Q8NGD4 311 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SLC35B4Q969S0 331 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 SH3KBP1Q96B97 665 aa9.16□□□□□ -0.94
CUX1-206ENST00000437600 HSPBAP1Q96EW2 488 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms