RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TM4SF5O14894 197 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 VILLO15195 856 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 GPR42O15529 346 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 TPST1O60507 370 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 UGDHO60701 494 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 SEC22BO75396 215 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 UGT2B4P06133 528 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 ATP1B2P14415 290 aaPredicted RBP14.36□□□□□ -0.11
USP4-203ENST00000415188 NCK1P16333 377 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 GABRG2P18507 467 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 NTSR1P30989 418 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 GDF5P43026 501 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 MAPK9P45984 424 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 DGKGP49619 791 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 DGKQP52824 942 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 CLDN8P56748 225 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 CHRNB3Q05901 458 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 CYP4F3Q08477 520 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 NUDT18Q6ZVK8 323 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 CYP2U1Q7Z449 544 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 TRMT11Q7Z4G4 463 aaKnown RBP14.36□□□□□ -0.11
USP4-203ENST00000415188 KIAA0907Q7Z7F0 614 aaPredicted RBP14.36□□□□□ -0.11
USP4-203ENST00000415188 RASGRP3Q8IV61 690 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 TMEFF1Q8IYR6 380 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 DTWD1Q8N5C7 304 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 DHRSXQ8N5I4 330 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 TRIML2Q8N7C3 387 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 FAM47BQ8NA70 645 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 OR2T12Q8NG77 320 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 FAM110BQ8TC76 370 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 HCAR2Q8TDS4 363 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 CMTM7Q96FZ5 175 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 SPACA7Q96KW9 195 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 ZNF583Q96ND8 569 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 RDH12Q96NR8 316 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 EDEM2Q9BV94 578 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 RMND5AQ9H871 391 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 DNAJC11Q9NVH1 559 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 NEUROG3Q9Y4Z2 214 aa14.36□□□□□ -0.11
USP4-203ENST00000415188 A0A096LPI6 279 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 TRBV5-3A0A0A0MS03 114 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 FAM220BPB1ANY3 271 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 GFYI3L273 518 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 GSTA4O15217 222 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 CLOCKO15516 846 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 HPRP00739 348 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 FTH1P02794 183 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 PGRP06401 933 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 ADRB1P08588 477 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 IL1RNP18510 177 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 RPS14P62263 151 aaKnown RBP14.35□□□□□ -0.11
USP4-203ENST00000415188 FAM174BQ3ZCQ3 159 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 RUNDC3AQ59EK9 446 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 KIAA1211LQ6NV74 962 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 CHPFQ8IZ52 775 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 ZNF548Q8NEK5 533 aaPredicted RBP14.35□□□□□ -0.11
USP4-203ENST00000415188 ZFP28Q8NHY6 868 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 MCOLN3Q8TDD5 553 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 PIGKQ92643 395 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 FBXL8Q96CD0 374 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 HEPHQ9BQS7 1158 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 TRIM8Q9BZR9 551 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 ELOVL6Q9H5J4 265 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 MAGIXQ9H6Y5 334 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 CAAP1Q9H8G2 361 aa14.35□□□□□ -0.11
USP4-203ENST00000415188 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.35□□□□□ -0.11
USP4-203ENST00000415188 CNOT1A5YKK6 2376 aaKnown RBP14.35□□□□□ -0.11
USP4-203ENST00000415188 LNP1A1A4G5 178 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 FAM149AA5PLN7 773 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 A8MX80 341 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 DFNA5O60443 496 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 PRMT3O60678 531 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 OR6B1O95007 311 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 BCKDHAP12694 445 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 EPORP19235 508 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 MTPNP58546 118 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 HMGCS1Q01581 520 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 EPS8Q12929 822 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 SELPLGQ14242 412 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 PTGR1Q14914 329 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 DPY19L1Q2PZI1 675 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.34□□□□□ -0.11
USP4-203ENST00000415188 LRIF1Q5T3J3 769 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 TTC33Q6PID6 262 aaPredicted RBP14.34□□□□□ -0.11
USP4-203ENST00000415188 ABRAXAS1Q6UWZ7 409 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 LPCAT2Q7L5N7 544 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 PATL1Q86TB9 770 aaKnown RBP14.34□□□□□ -0.11
USP4-203ENST00000415188 RAVER1Q8IY67 606 aaKnown RBP14.34□□□□□ -0.11
USP4-203ENST00000415188 KLHDC8AQ8IYD2 350 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 TRAM1L1Q8N609 369 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 DEFB119Q8N690 84 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 ADAMTS16Q8TE57 1224 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 SELENOMQ8WWX9 145 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 TESCQ96BS2 214 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 METTL2AQ96IZ6 378 aaKnown RBP14.34□□□□□ -0.11
USP4-203ENST00000415188 ITCHQ96J02 903 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 LRIG1Q96JA1 1093 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 FCRL1Q96LA6 429 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 RNF145Q96MT1 663 aa14.34□□□□□ -0.11
USP4-203ENST00000415188 CNTNAP3BQ96NU0 1288 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms