RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 BACE2Q9Y5Z0 518 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 SCN8AQ9UQD0 1980 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 ISPDA4D126 451 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 PSMD11O00231 422 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 SSX4O60224 188 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 CLDN7O95471 211 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 HIST1H2AGP0C0S8 130 aaPredicted RBP9.5□□□□□ -0.89
CD44-206ENST00000415148 MPC1LP0DKB6 136 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 HIST1H2ADP20671 130 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 GTF2E2P29084 291 aaKnown RBP9.5□□□□□ -0.89
CD44-206ENST00000415148 CCND3P30281 292 aaPredicted RBP9.5□□□□□ -0.89
CD44-206ENST00000415148 HOXA9P31269 272 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 GRK5P34947 590 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 BMPR1AP36894 532 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 GSSP48637 474 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 CRHR2Q13324 411 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 GTF2H3Q13889 308 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 SYT16Q17RD7 645 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 UBE2UQ5VVX9 321 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 MLIPQ5VWP3 458 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 FAHD1Q6P587 224 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 PRSS55Q6UWB4 352 aaPredicted RBP9.5□□□□□ -0.89
CD44-206ENST00000415148 MBOAT1Q6ZNC8 495 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 SPATC1Q76KD6 591 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 TAS1R1Q7RTX1 841 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 ZZZ3Q8IYH5 903 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 RHOXF1Q8NHV9 184 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 HIST1H2AHQ96KK5 128 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 SIGLEC11Q96RL6 698 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 EPYCQ99645 322 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 HIST1H2AJQ99878 128 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 H2AFJQ9BTM1 129 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 DSN1Q9H410 356 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 KRT84Q9NSB2 600 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 FAM120CQ9NX05 1096 aaKnown RBP9.5□□□□□ -0.89
CD44-206ENST00000415148 QPCTLQ9NXS2 382 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 GPRC5BQ9NZH0 403 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 PDP1Q9P0J1 537 aaPredicted RBP9.5□□□□□ -0.89
CD44-206ENST00000415148 OSGIN1Q9UJX0 560 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 MAPRE3Q9UPY8 281 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 A3GALT2U3KPV4 340 aa9.5□□□□□ -0.89
CD44-206ENST00000415148 CXorf51AA0A1B0GTR3 108 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 UPK3BL1B0FP48 263 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 UPK3BL2E5RIL1 263 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 hCG_2039718K7EN88 272 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 GFRA2O00451 464 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 FPGTO14772 594 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 HOXA2O43364 376 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 UGDHO60701 494 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 FAM20BO75063 409 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 EPN2O95208 641 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 IRF1P10914 325 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 LIPAP38571 399 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 EIF2DP41214 584 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 CSKP41240 450 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 SLC6A12P48065 614 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 PPP5CP53041 499 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 ITGA1P56199 1179 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 SP140Q13342 867 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 ATAD3BQ5T9A4 648 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 DEPDC1Q5TB30 811 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 ZDHHC20Q5W0Z9 365 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 NOXRED1Q6NXP6 359 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 ZCCHC8Q6NZY4 707 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 TPGS1Q6ZTW0 290 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 GPR155Q7Z3F1 870 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 LYSMD2Q8IV50 215 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 OR8J2Q8NGG1 315 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 DACH2Q96NX9 599 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 TSSK3Q96PN8 268 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 C2orf49Q9BVC5 232 aaPredicted RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 MRPL9Q9BYD2 267 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 EHD1Q9H4M9 534 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 REEP1Q9H902 201 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 PLCXD1Q9NUJ7 323 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 AFF4Q9UHB7 1163 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 ZNF229Q9UJW7 825 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 UGT2A1Q9Y4X1 527 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 HTTP42858 3142 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 OR2A25A4D2G3 310 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 MYO1GB0I1T2 1018 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 TBX1O43435 398 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 NUAK1O60285 661 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 SEC24AO95486 1093 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 C9P02748 559 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 EIF2S1P05198 315 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 OR56A5P0C7T3 313 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 ENGP17813 658 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 PPIBP23284 216 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 TACR1P25103 407 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 KRT20P35900 424 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 PXNP49023 591 aaPredicted RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 ALDH7A1P49419 539 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 CRISP3P54108 245 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 CDC20Q12834 499 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 NPRL3Q12980 569 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 CSTF3Q12996 717 aaKnown RBP9.49□□□□□ -0.89
CD44-206ENST00000415148 STEAP3Q658P3 488 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 OR4F3Q6IEY1 312 aa9.49□□□□□ -0.89
CD44-206ENST00000415148 UBE2R2Q712K3 238 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms