RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SNX3O60493 162 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 CHEK2O96017 543 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 KRT6AP02538 564 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 KRT6BP04259 564 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 KITP10721 976 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 VARSP26640 1264 aaKnown RBP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 ALDH4A1P30038 563 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 ARL1P40616 181 aaPredicted RBP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 KRT6CP48668 564 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 INHBCP55103 352 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 REEP5Q00765 189 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 SLBPQ14493 270 aaKnown RBP eCLIP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 ZRSR2Q15696 482 aaKnown RBP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 CLPPQ16740 277 aaPredicted RBP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 HIST2H2ACQ16777 129 aaPredicted RBP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 FRG2Q64ET8 278 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 HIST2H2AA3Q6FI13 130 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 MED27Q6P2C8 311 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 EPGNQ6UW88 154 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 MAVSQ7Z434 540 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 TRIM46Q7Z4K8 759 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 KRT78Q8N1N4 520 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 WDR20Q8TBZ3 569 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 AGR3Q8TD06 166 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 USP7Q93009 1102 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 REPS1Q96D71 796 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 ZDHHC12Q96GR4 267 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 SEC16BQ96JE7 1060 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 PRAP1Q96NZ9 151 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 FRG2BQ96QU4 278 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 PLCD4Q9BRC7 762 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 DPH7Q9BTV6 452 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 ABCG4Q9H172 646 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 RHBGQ9H310 441 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 SEMA6CQ9H3T2 930 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 TUBB1Q9H4B7 451 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 PFDN4Q9NQP4 134 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 SEMA5BQ9P283 1151 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 MARCOQ9UEW3 520 aaPredicted RBP13.7□□□□□ -0.22
SF3B1-204ENST00000414963 HCN4Q9Y3Q4 1203 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 TIMM22Q9Y584 194 aa13.7□□□□□ -0.22
SF3B1-204ENST00000414963 USP34Q70CQ2 3546 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 A0A0J9YY10 115 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 TRBC2A0A5B9 178 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 CPED1A4D0V7 1026 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 OR2A25A4D2G3 310 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 TRPC5OSA6NMA1 111 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 DUX1O43812 170 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 ULK1O75385 1050 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 LDOC1O95751 146 aaPredicted RBP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 C9P02748 559 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 CKMT2P17540 419 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 ACP1P24666 158 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 SERPINB3P29508 390 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 HMOX2P30519 316 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 LSSP48449 732 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 CPSF6Q16630 551 aaKnown RBP eCLIP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 PERM1Q5SV97 790 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 FIGLAQ6QHK4 219 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 TMIGD1Q6UXZ0 262 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 SPATA21Q7Z572 469 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 PAQR7Q86WK9 346 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 MYLK4Q86YV6 388 aaPredicted RBP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 PLXDC1Q8IUK5 500 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 OR7G3Q8NG95 312 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 RFWD2Q8NHY2 731 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 BAHD1Q8TBE0 780 aaPredicted RBP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 RHBDD1Q8TEB9 315 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 TWIST2Q8WVJ9 160 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 AHCYL2Q96HN2 611 aaKnown RBP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 CNDP2Q96KP4 475 aaKnown RBP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 DPYSL5Q9BPU6 564 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 ELAC2Q9BQ52 826 aaKnown RBP13.69□□□□□ -0.22
SF3B1-204ENST00000414963 CHRNA10Q9GZZ6 450 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 MEAF6Q9HAF1 191 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 NPHS2Q9NP85 383 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 C1GALT1Q9NS00 363 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 ADGRE2Q9UHX3 823 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 PPT2Q9UMR5 302 aa13.69□□□□□ -0.22
SF3B1-204ENST00000414963 MN1Q10571 1320 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 NPIPB8E9PQR5 432 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 FOXE1O00358 373 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 CAPN5O15484 640 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 CBFA2T3O75081 653 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 GP1BAP07359 652 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 GSTM2P28161 218 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 SERPINB1P30740 379 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 PIK3CBP42338 1070 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 IDH3AP50213 366 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 AQP5P55064 265 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 PPP1CAP62136 330 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 DAB2P98082 770 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 CFHR1Q03591 330 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 BTKQ06187 659 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 IFT88Q13099 833 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 AASDHQ4L235 1098 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 XKR7Q5GH72 579 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 TCHHL1Q5QJ38 904 aaPredicted RBP13.68□□□□□ -0.22
SF3B1-204ENST00000414963 NKAIN2Q5VXU1 208 aa13.68□□□□□ -0.22
SF3B1-204ENST00000414963 FCRL6Q6DN72 434 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms