RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 C5orf42Q9H799 3197 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 TRBV5-3A0A0A0MS03 114 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 GNG14A0A1W2PPG7 69 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 MYO1DO94832 1006 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 GABARAPO95166 117 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CRATP43155 626 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CHST9Q7L1S5 443 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 COPS4Q9BT78 406 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 WNT9AO14904 365 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 YY2O15391 372 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 AIREO43918 545 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CNOT3O75175 753 aaKnown RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 KCNK5O95279 499 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 POU1F1P28069 291 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 SERPINB1P30740 379 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CD70P32970 193 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 GZMMP51124 257 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 ACSM2AQ08AH3 577 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 MAD2L1BPQ15013 274 aaPredicted RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DGKKQ5KSL6 1271 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 FRG2Q64ET8 278 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 ACSM2BQ68CK6 577 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CRTC1Q6UUV9 634 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CALHM3Q86XJ0 350 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 CCDC71Q8IV32 467 aaPredicted RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 OR4K1Q8NGD4 311 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 FRG2BQ96QU4 278 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 C2orf49Q9BVC5 232 aaPredicted RBP11.76□□□□□ -0.53
CLIP3-201ENST00000360535 MROQ9BYG7 248 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 TM9SF3Q9HD45 589 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 RNF186Q9NXI6 227 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 TAS2R16Q9NYV7 291 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 FZD4Q9ULV1 537 aa11.76□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM88BA6NKF7 163 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 RPLP2P05387 115 aaKnown RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 ALOX12P18054 663 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 FPR1P21462 350 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 HOXA9P31269 272 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 LIPAP38571 399 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 NSG1P42857 185 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 PPP3CCP48454 512 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 NPRL3Q12980 569 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 MADCAM1Q13477 382 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 CAMK2GQ13555 558 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 KIAA1614Q5VZ46 1190 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 DNAJB7Q7Z6W7 309 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 OR6Q1Q8NGQ2 317 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 CHCHD6Q9BRQ6 235 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 HTATIP2Q9BUP3 242 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 KLF16Q9BXK1 252 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM121BQ9BXQ6 578 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 MAGIXQ9H6Y5 334 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 MARCH7Q9H992 704 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 TPT1P8Q9HAU6 139 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 GIN1Q9NXP7 522 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM221A6NGB7 291 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 PRPS2P11908 318 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 CD9P21926 228 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 GADD45AP24522 165 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 B4GALNT1Q00973 533 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 DMC1Q14565 340 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 UGT8Q16880 541 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 DUOXA1Q1HG43 343 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 INO80DQ53TQ3 878 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 RGMBQ6NW40 437 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 SLC7A5P1Q8MH63 180 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 S100ZQ8WXG8 99 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 RERGLQ9H628 205 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 RAD18Q9NS91 495 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 KIAA1522Q9P206 1035 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 AQP9O43315 295 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 AMD1P17707 334 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 PTPN6P29350 595 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 SERPINA4P29622 427 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 AP1S1P61966 158 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 NAE1Q13564 534 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 VEPH1Q14D04 833 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 HIST2H2ACQ16777 129 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 IER5LQ5T953 404 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 KDM4DQ6B0I6 523 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 CCSAPQ6IQ19 270 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 HEATR4Q86WZ0 1026 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 SLC44A2Q8IWA5 706 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 ZZZ3Q8IYH5 903 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 NLGN4XQ8N0W4 816 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 SVOPQ8N4V2 548 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 LILRA3Q8N6C8 439 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 HJURPQ8NCD3 748 aaPredicted RBP11.75□□□□□ -0.53
CLIP3-201ENST00000360535 OR5AK3PQ8NH89 298 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 DSN1Q9H410 356 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 TMEM184CQ9NVA4 438 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 GPR83Q9NYM4 423 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 RHCGQ9UBD6 479 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 RPS6KA6Q9UK32 745 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 YIPF1Q9Y548 306 aa11.75□□□□□ -0.53
CLIP3-201ENST00000360535 OR56A5P0C7T3 313 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 AOAHP28039 575 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 CDH12P55289 794 aa11.74□□□□□ -0.53
CLIP3-201ENST00000360535 RPS3AP61247 264 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms