RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ACY1Q03154 408 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 NXPE4Q6UWF7 544 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 SLCO4C1Q6ZQN7 724 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 USP7Q93009 1102 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 SLC46A1Q96NT5 459 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 NSUN5Q96P11 429 aaKnown RBP21.24■□□□□ 0.99
SHMT1-203ENST00000354098 SSU72Q9NP77 194 aaKnown RBP21.24■□□□□ 0.99
SHMT1-203ENST00000354098 FEZF1A0PJY2 475 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 TMEM150CB9EJG8 249 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 POLR1CO15160 346 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-203ENST00000354098 CPA3P15088 417 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 HRH2P25021 359 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 VARSP26640 1264 aaKnown RBP21.24■□□□□ 0.99
SHMT1-203ENST00000354098 CCR8P51685 355 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 SHC2P98077 582 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 COL9A2Q14055 689 aaPredicted RBP21.24■□□□□ 0.99
SHMT1-203ENST00000354098 MPP2Q14168 576 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 NAA25Q14CX7 972 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 RTP5Q14D33 572 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 FRMPD2BQ6IN97 320 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 MCATQ8IVS2 390 aaKnown RBP21.24■□□□□ 0.99
SHMT1-203ENST00000354098 ZNF740Q8NDX6 193 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 OR4K1Q8NGD4 311 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 OR1L3Q8NH93 324 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 TMEM237Q96Q45 408 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 SH3GL2Q99962 352 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 GPRC5BQ9NZH0 403 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 COPG2Q9UBF2 871 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 PCTPQ9UKL6 214 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 ANGPTL2Q9UKU9 493 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 B3GALT1Q9Y5Z6 326 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 AK5Q9Y6K8 562 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 NCOR2Q9Y618 2525 aa21.24■□□□□ 0.99
SHMT1-203ENST00000354098 ASPMQ8IZT6 3477 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 LOC105369274A0A096LPK9 316 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 LOC102723532A0A0G2JNH3 316 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 C9orf172C9J069 976 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 EPB42P16452 691 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 PRKAA2P54646 552 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 CYP4F3Q08477 520 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 GTF2H2Q13888 395 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 GTF2H2CQ6P1K8 395 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 RNF44Q7L0R7 432 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 GOLGA7Q7Z5G4 137 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 OR4N4Q8N0Y3 316 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 RDH11Q8TC12 318 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 TAAR9Q96RI9 348 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 ZFYVE21Q9BQ24 234 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 KCNK9Q9NPC2 374 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 PLCL2Q9UPR0 1127 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 ANGPTL3Q9Y5C1 460 aa21.23■□□□□ 0.99
SHMT1-203ENST00000354098 LCMT2O60294 686 aaKnown RBP21.22■□□□□ 0.99
SHMT1-203ENST00000354098 RPS17P08708 135 aaKnown RBP21.22■□□□□ 0.99
SHMT1-203ENST00000354098 MSL3P1P0C860 447 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 C1GALT1C1LP0DN25 315 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 EZRP15311 586 aaKnown RBP21.22■□□□□ 0.99
SHMT1-203ENST00000354098 IMPDH1P20839 514 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 HERVK_113P63132 956 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 IL11RAQ14626 422 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 PCLAFQ15004 111 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 UNC50Q53HI1 259 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 TTMPQ5BVD1 217 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 ZC3H12BQ5HYM0 836 aaKnown RBP21.22■□□□□ 0.99
SHMT1-203ENST00000354098 ZNF678Q5SXM1 525 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 AGBL2Q5U5Z8 902 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 PRAMEF17Q5VTA0 474 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 SLC22A9Q8IVM8 553 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 ERVK-6Q9BXR3 956 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 CAPS2Q9BXY5 557 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 SPRTNQ9H040 489 aaPredicted RBP21.22■□□□□ 0.99
SHMT1-203ENST00000354098 PELI2Q9HAT8 420 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 ZBTB26Q9HCK0 441 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 RARRES3Q9UL19 164 aa21.22■□□□□ 0.99
SHMT1-203ENST00000354098 CLGNO14967 610 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 BRINP1O60477 761 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 TIAF1O95411 115 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 FGF5P12034 268 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 TSPAN8P19075 237 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 ETV4P43268 484 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 CDH13P55290 713 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 XKR6Q5GH73 641 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 DCAF12Q5T6F0 453 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 ATG9BQ674R7 924 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 METTL2BQ6P1Q9 378 aaKnown RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 C10orf107Q8IVU9 208 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 N4BP2L2Q92802 583 aaPredicted RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 OR2A5Q96R48 311 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 MECRQ9BV79 373 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 C1QTNF3Q9BXJ4 246 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 IPPKQ9H8X2 491 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 ASCL3Q9NQ33 180 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 OXSMQ9NWU1 459 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 FOXJ2Q9P0K8 574 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 HEATR5BQ9P2D3 2071 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 H3BMH7 237 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 PPP6CO00743 305 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 PRPF4O43172 522 aaKnown RBP eCLIP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 CD22P20273 847 aa21.21■□□□□ 0.99
SHMT1-203ENST00000354098 RBMS1P29558 406 aaKnown RBP21.21■□□□□ 0.99
SHMT1-203ENST00000354098 BCL6P41182 706 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms