RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 SH3PXD2BA1X283 911 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 ADAMTS4O75173 837 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 CCNKO75909 580 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 KLK1P06870 262 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 TTKP33981 857 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 DBPQ10586 325 aaPredicted RBP11.59□□□□□ -0.55
USP1-201ENST00000339950 ZNF773Q6PK81 442 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 P2RY13Q9BPV8 354 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 MCMBPQ9BTE3 642 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 DUSP26Q9BV47 211 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 C14orf119Q9NWQ9 140 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 THUMPD1Q9NXG2 353 aaKnown RBP11.59□□□□□ -0.55
USP1-201ENST00000339950 CNOT11Q9UKZ1 510 aaKnown RBP11.59□□□□□ -0.55
USP1-201ENST00000339950 NEU3Q9UQ49 428 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 MED16Q9Y2X0 877 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 PCDHB1Q9Y5F3 818 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 SPAG17Q6Q759 2223 aa11.59□□□□□ -0.55
USP1-201ENST00000339950 TMEM202A6NGA9 273 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 ZNF99A8MXY4 864 aaPredicted RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 NSG1P42857 185 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 TIAL1Q01085 375 aaKnown RBP eCLIP11.58□□□□□ -0.56
USP1-201ENST00000339950 CTBSQ01459 385 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 RNASE12Q5GAN4 147 aaKnown RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 INTS11Q5TA45 600 aaKnown RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 OR2T5Q6IEZ7 315 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 NOXRED1Q6NXP6 359 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 KLHL17Q6TDP4 642 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SBSNQ6UWP8 590 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 OR2AP1Q8NGE2 309 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 OR2T29Q8NH02 315 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 DYRK1BQ9Y463 629 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 CKAP5Q14008 2032 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 MGAMO43451 1857 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 WASH3PC4AMC7 463 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 AIREO43918 545 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 HOXD8P13378 290 aaPredicted RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 POLR2EP19388 210 aaKnown RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 PAX3P23760 479 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 HMGCLP35914 325 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 GPR1P46091 355 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 NKX3-2P78367 333 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 DSC3Q14574 896 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 PLEKHG6Q3KR16 790 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 CERS6Q6ZMG9 384 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SLC22A16Q86VW1 577 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 TSPAN18Q96SJ8 248 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 BEX2Q9BXY8 128 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SLC2A11Q9BYW1 496 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SLC32A1Q9H598 525 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 TRPV5Q9NQA5 729 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 MARCH5Q9NX47 278 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SATB2Q9UPW6 733 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 CCL26Q9Y258 94 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 CLDN25C9JDP6 229 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 E7EQ34 232 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 H3BM21 787 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SLC1A7O00341 560 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 UMPSP11172 480 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 MAT2AP31153 395 aaKnown RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 HTR7P34969 479 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 ALDH3B2P48448 385 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 RUNX1T1Q06455 604 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 SPARTQ8N0X7 666 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 GHDCQ8N2G8 530 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 ABHD11Q8NFV4 315 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 ARSGQ96EG1 525 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 PYURFQ96I23 114 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 ZNF334Q9HCZ1 680 aaPredicted RBP11.58□□□□□ -0.56
USP1-201ENST00000339950 KCNE2Q9Y6J6 123 aa11.58□□□□□ -0.56
USP1-201ENST00000339950 ANK1P16157 1881 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 STX16O14662 325 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 TAPBPO15533 448 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 ABCB7O75027 752 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CLPXO76031 633 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 C6orf47O95873 294 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 PDHA2P29803 388 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 RAB25P57735 213 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 ZNF829Q3KNS6 432 aaPredicted RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 LY6G5CQ5SRR4 150 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 THOC7Q6I9Y2 204 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 CRTC1Q6UUV9 634 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CHST9Q7L1S5 443 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 OR9Q2Q8NGE9 314 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 WDR36Q8NI36 951 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 NFKBIDQ8NI38 313 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CLSTN3Q9BQT9 956 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 AMBRA1Q9C0C7 1298 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CD320Q9NPF0 282 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 GIN1Q9NXP7 522 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 IL20RAQ9UHF4 553 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 EFCAB9A8MZ26 197 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CH25HO95992 272 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 STSP08842 583 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 C8orf89P0DMQ9 161 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 MAPK1P28482 360 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 SLC14A1Q13336 389 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 FNDC3BQ53EP0 1204 aaKnown RBP11.57□□□□□ -0.56
USP1-201ENST00000339950 SPANXN2Q5MJ10 180 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 CATSPEREQ5SY80 951 aa11.57□□□□□ -0.56
USP1-201ENST00000339950 NCEH1Q6PIU2 408 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms