RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NANOGQ9H9S0 305 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SEMA4GQ9NTN9 838 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PCNX1Q96RV3 2341 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 BCLAF3A2AJT9 711 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 IQCF5A8MTL0 148 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CSNK2A2P19784 350 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 P2RY2P41231 377 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF84P51523 738 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 DPYSQ14117 519 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SERTAD2Q14140 314 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PTPRCAPQ14761 206 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PDZK1Q5T2W1 519 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LRRC38Q5VT99 294 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 AGAP7PQ5VUJ5 663 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PLEKHA7Q6IQ23 1121 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MZT2BQ6NZ67 158 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PGM2L1Q6PCE3 622 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CES3Q6UWW8 571 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MBOAT1Q6ZNC8 495 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SYT13Q7L8C5 426 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 KIAA0907Q7Z7F0 614 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 APOBEC4Q8WW27 367 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 AGAP4Q96P64 663 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 PCED1AQ9H1Q7 454 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 BRF2Q9HAW0 419 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 EMC9Q9Y3B6 208 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC154A6NI56 674 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TCF4P15884 667 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ENGP17813 658 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TSPAN8P19075 237 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ITGB7P26010 798 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 UQCRC1P31930 480 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 DCDP81605 110 aaKnown RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MZT1Q08AG7 82 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TUBA3CQ13748 450 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 EXOC3L2Q2M3D2 409 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LHX8Q68G74 356 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LINC00696Q6ZRV3 163 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 Q6ZVL8 140 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 GPR155Q7Z3F1 870 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 POLNQ7Z5Q5 900 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CCDC116Q8IYX3 515 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 FTMTQ8N4E7 242 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 DDHD1Q8NEL9 900 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 SHKBP1Q8TBC3 707 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 IGSF8Q969P0 613 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CPNE2Q96FN4 548 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ZBED3Q96IU2 234 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-218ENST00000640036 TBC1D10AQ9BXI6 508 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 ACTL8Q9H568 366 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 CIDEBQ9UHD4 219 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 KCNIP3Q9Y2W7 256 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 OR1A2Q9Y585 309 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 LYVE1Q9Y5Y7 322 aa4.89□□□□□ -1.63
SCN1A-218ENST00000640036 MBLAC1A4D2B0 266 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CNMDO75829 334 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SNCGO76070 127 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SAGP10523 405 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MYL12AP19105 171 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CPOXP36551 454 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 GNALP38405 381 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PTDSS1P48651 473 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ABATP80404 500 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 RSPO4Q2I0M5 234 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 WASHC2DQ5SRD0 308 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SULT1C3Q6IMI6 304 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 BPHLQ86WA6 291 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 FAM71AQ8IYT1 594 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ATG16L2Q8NAA4 619 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC35C1Q96A29 364 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ALG9Q9H6U8 611 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MKKSQ9NPJ1 570 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 XPNPEP1Q9NQW7 623 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 POLE4Q9NR33 117 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 EMC3Q9P0I2 261 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 B4GALT6Q9UBX8 382 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PPT2Q9UMR5 302 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ZNF451Q9Y4E5 1061 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 MTCH2Q9Y6C9 303 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 LRRC37A3O60309 1634 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 IGLV3-22A0A075B6J6 115 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ELOA3DA6NLF2 546 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ANKRD66B4E2M5 251 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PPP1R11O60927 126 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SNUPNO95149 360 aaKnown RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 LRATO95237 230 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 PGLSO95336 258 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 AHSA1O95433 338 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CLDN9O95484 217 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ZBTB11O95625 1053 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CYP11A1P05108 521 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CYP1A2P05177 515 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 TFEBP19484 476 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 CLDN2P57739 230 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC7A9P82251 487 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 BNIP1Q12981 228 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ST3GAL2Q16842 350 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 ELOA3BQ3SY89 546 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 SLC9B1Q4ZJI4 515 aa4.88□□□□□ -1.63
SCN1A-218ENST00000640036 EIPR1Q53HC9 387 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms