RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PLK5Q496M5 336 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 AMIGO1Q86WK6 493 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 TRIM48Q8IWZ4 208 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 ZDHHC1Q8WTX9 485 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 TAGLN3Q9UI15 199 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 PIPSLA2A3N6 862 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 H0YIV9 168 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 VPS4BO75351 444 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 XRCC1P18887 633 aaPredicted RBP19.37■□□□□ 0.69
CLN3-250ENST00000636839 CCND1P24385 295 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 HNF4AP41235 474 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 C21orf59P57076 290 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 UBE2IP63279 158 aaKnown RBP19.37■□□□□ 0.69
CLN3-250ENST00000636839 GK5Q6ZS86 529 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 C17orf64Q86WR6 236 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 HUS1BQ8NHY5 278 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 WDR34Q96EX3 536 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 TEX37Q96LM6 180 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 CCT7Q99832 543 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 HAUS8Q9BT25 410 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 CCDC167Q9P0B6 97 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 SNX11Q9Y5W9 270 aa19.37■□□□□ 0.69
CLN3-250ENST00000636839 FEZF1A0PJY2 475 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 MAGEB17A8MXT2 336 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 RGS14O43566 566 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 VIPP01282 170 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 GPX3P22352 226 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 MAZP56270 477 aaKnown RBP19.36■□□□□ 0.69
CLN3-250ENST00000636839 IMPG1Q17R60 797 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 DEFB133Q30KQ1 61 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 ICE2Q659A1 982 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 OGFOD2Q6N063 350 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 SNX32Q86XE0 403 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 FAM129CQ86XR2 697 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 PLD3Q8IV08 490 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 ADGRF3Q8IZF5 1079 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 RAB42Q8N4Z0 105 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 FBXL6Q8N531 539 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 ZNF548Q8NEK5 533 aaPredicted RBP19.36■□□□□ 0.69
CLN3-250ENST00000636839 SRMSQ9H3Y6 488 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 TXLNGQ9NUQ3 528 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 GPR45Q9Y5Y3 372 aa19.36■□□□□ 0.69
CLN3-250ENST00000636839 SLC28A1O00337 649 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 SEC22BO75396 215 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 CHRM5P08912 532 aaPredicted RBP19.35■□□□□ 0.69
CLN3-250ENST00000636839 COX4I1P13073 169 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 HOXB3P14651 431 aaPredicted RBP19.35■□□□□ 0.69
CLN3-250ENST00000636839 ERVK-8P63133 956 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 RPL38P63173 70 aaKnown RBP19.35■□□□□ 0.69
CLN3-250ENST00000636839 SQLEQ14534 574 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 PLCL1Q15111 1095 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 AGKQ53H12 422 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 MED27Q6P2C8 311 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 FUNDC1Q8IVP5 155 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 APIPQ96GX9 242 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 SPEGQ15772 3267 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 ZNF839A8K0R7 811 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 PSMD12O00232 456 aaPredicted RBP19.35■□□□□ 0.69
CLN3-250ENST00000636839 CALB2P22676 271 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 NDUFS1P28331 727 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 KCNJ2P63252 427 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 PRDX1Q06830 199 aaKnown RBP19.35■□□□□ 0.69
CLN3-250ENST00000636839 BNIP3Q12983 259 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 IL23RQ5VWK5 629 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 ASRGL1Q7L266 308 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 LRTM1Q9HBL6 345 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 PRM3Q9NNZ6 103 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 PFDN4Q9NQP4 134 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 POLR3HQ9Y535 204 aaPredicted RBP19.35■□□□□ 0.69
CLN3-250ENST00000636839 PCDHB11Q9Y5F2 797 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 PCDHGA11Q9Y5H2 935 aa19.35■□□□□ 0.69
CLN3-250ENST00000636839 ISM1B1AKI9 464 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 B2RBV5 119 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 G6PDP11413 515 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 ACTN3Q08043 901 aaPredicted RBP19.34■□□□□ 0.69
CLN3-250ENST00000636839 KIAA0040Q15053 153 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 ELOCQ15369 112 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 RNF165Q6ZSG1 346 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 VN1R5Q7Z5H4 357 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 CHCHD4Q8N4Q1 142 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 OR10G6Q8NH81 332 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 PIGKQ92643 395 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 RAB11FIP5Q9BXF6 653 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 EHD1Q9H4M9 534 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 SLC6A20Q9NP91 592 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 AIG1Q9NVV5 245 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 BAIAP2L1Q9UHR4 511 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 PILRBQ9UKJ0 227 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 RRP15Q9Y3B9 282 aaKnown RBP19.34■□□□□ 0.69
CLN3-250ENST00000636839 OR6C74A6NCV1 312 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 AQP9O43315 295 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 POLR2CP19387 275 aaPredicted RBP19.34■□□□□ 0.69
CLN3-250ENST00000636839 SHMT2P34897 504 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 UFM1P61960 85 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 RPS13P62277 151 aaKnown RBP19.34■□□□□ 0.69
CLN3-250ENST00000636839 EMX2Q04743 252 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 RBBP5Q15291 538 aaKnown RBP19.34■□□□□ 0.69
CLN3-250ENST00000636839 KIAA1614Q5VZ46 1190 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 SPATA19Q7Z5L4 167 aa19.34■□□□□ 0.69
CLN3-250ENST00000636839 TRIM73Q86UV7 250 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms