RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ZNF558Q96NG5 402 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 EXD2Q9NVH0 621 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 A0A1W2PQ67 120 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PABPN1LA6NDY0 278 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PTGES3LE9PB15 166 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 FPGTO14772 594 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 MRPS14O60783 128 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 JRKO75564 520 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 EPN2O95208 641 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PARNO95453 639 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF682O95780 498 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 FTH1P02794 183 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 URODP06132 367 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 UGT2B4P06133 528 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 ENGP17813 658 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CD6P30203 668 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 KDELR2P33947 212 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 SLC35A2P78381 396 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CHIT1Q13231 466 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 ZCCHC8Q6NZY4 707 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CBLL1Q75N03 491 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 EIF3MQ7L2H7 374 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PIWIL3Q7Z3Z3 882 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 SLC22A15Q8IZD6 547 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 SNRNP27Q8WVK2 155 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 MRPS31Q92665 395 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 C11orf24Q96F05 449 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 ZNF347Q96SE7 839 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CEP44Q9C0F1 390 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 BRD9Q9H8M2 597 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 SPATA6Q9NWH7 488 aaPredicted RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 B4GALT6Q9UBX8 382 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 NDRG4Q9ULP0 352 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 ERGIC3Q9Y282 383 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 TDRKHQ9Y2W6 561 aaKnown RBP12.38□□□□□ -0.43
LINC00540-203ENST00000631321 TPRKBQ9Y3C4 175 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 PLXNB3Q9ULL4 1909 aa12.38□□□□□ -0.43
LINC00540-203ENST00000631321 CFAP99D6REC4 459 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 J3QRK9 145 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 XPNPEP2O43895 674 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 POP4O95707 220 aaKnown RBP12.37□□□□□ -0.43
LINC00540-203ENST00000631321 FABP3P05413 133 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 CD22P20273 847 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 ITPKAP23677 461 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 GABRR2P28476 465 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 ARHGDIAP52565 204 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 CCL23P55773 120 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 PCDH1Q08174 1060 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 NR1D2Q14995 579 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 GALNT5Q7Z7M9 940 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SYT12Q8IV01 421 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 KLHDC8AQ8IYD2 350 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 CENPSQ8N2Z9 138 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 OR7A2PQ8NGA2 310 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 WDR20Q8TBZ3 569 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SKA2Q8WVK7 121 aaPredicted RBP12.37□□□□□ -0.43
LINC00540-203ENST00000631321 PANX1Q96RD7 426 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SPATA9Q9BWV2 254 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 CFHR5Q9BXR6 569 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 ERVK-11Q9UQG0 969 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 PCDHGA10Q9Y5H3 936 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 AP1M2Q9Y6Q5 423 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 MAGEB17A8MXT2 336 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SGTAO43765 313 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 XYLBO75191 536 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 AP2A2O94973 939 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 C1QCP02747 245 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 CKMP06732 381 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 HALP42357 657 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 NOGQ13253 232 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 VEZF1Q14119 521 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SERPINA13PQ6UXR4 307 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 DPY19L3Q6ZPD9 716 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 DDX53Q86TM3 631 aaKnown RBP12.37□□□□□ -0.43
LINC00540-203ENST00000631321 TMC8Q8IU68 726 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SLAIN1Q8ND83 568 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 STARD8Q92502 1023 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 YIPF6Q96EC8 236 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 VMP1Q96GC9 406 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 SH3YL1Q96HL8 342 aaPredicted RBP12.37□□□□□ -0.43
LINC00540-203ENST00000631321 FAM83CQ9BQN1 747 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 EMILIN2Q9BXX0 1053 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 RIBC2Q9H4K1 309 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 ERVK-18Q9QC07 812 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 VPS29Q9UBQ0 182 aa12.37□□□□□ -0.43
LINC00540-203ENST00000631321 RUVBL1Q9Y265 456 aaKnown RBP12.37□□□□□ -0.43
LINC00540-203ENST00000631321 AXIN1O15169 862 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 SLC22A1O15245 554 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 SLCO2B1O94956 709 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 GNRH1P01148 92 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 HSD3B1P14060 373 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 HSD3B2P26439 372 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 HLA-FP30511 346 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 HOXA9P31269 272 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 ITGA1P56199 1179 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 PHEXP78562 749 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 VLDLRP98155 873 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 GTF2H3Q13889 308 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 NPTX1Q15818 432 aa12.36□□□□□ -0.43
LINC00540-203ENST00000631321 IQCCQ4KMZ1 466 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms