RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GRB7Q14451 532 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 DUOXA1Q1HG43 343 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 BRAT1Q6PJG6 821 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 GPR151Q8TDV0 419 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 IMP4Q96G21 291 aaKnown RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 MRGPRX2Q96LB1 330 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 IFT27Q9BW83 186 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 OR51B5Q9H339 312 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PREBQ9HCU5 417 aa13.65□□□□□ -0.22
CPSF1-212ENST00000616140 THUMPD1Q9NXG2 353 aaKnown RBP13.65□□□□□ -0.22
CPSF1-212ENST00000616140 PRORSD1PA6NEY8 169 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 OR1I1O60431 355 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 INMTO95050 263 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ACRP10323 421 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 GKP32189 559 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 LEPRP48357 1165 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 BCAP31P51572 246 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 RAB15P59190 212 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ADAM17P78536 824 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MVKQ03426 396 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 PTGES3Q15185 160 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SPIN4Q56A73 249 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 GPRIN1Q7Z2K8 1008 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 DCAF4L2Q8NA75 395 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF461Q8TAF7 563 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 C9orf43Q8TAL5 461 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 GEMIN6Q8WXD5 167 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 LRCH3Q96II8 777 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MUS81Q96NY9 551 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ZSCAN5AQ9BUG6 496 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SLC35C2Q9NQQ7 365 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 TAS2R7Q9NYW3 318 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 WWP2O00308 870 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 POP7O75817 140 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF182P17025 639 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 CSNK2A2P19784 350 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ACTR1BP42025 376 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ACTR1AP61163 376 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 GPRC6AQ5T6X5 926 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 Q6ZVL8 140 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 THOC6Q86W42 341 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF280BQ86YH2 543 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SLC2A13Q96QE2 648 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 PSKH2Q96QS6 385 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 TBX5Q99593 518 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 GSDMCQ9BYG8 508 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SRMSQ9H3Y6 488 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MRM3Q9HC36 420 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MBD2Q9UBB5 411 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MRTO4Q9UKD2 239 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 KDELR3O43731 214 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 KHKP50053 298 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 KCNAB2Q13303 367 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SEMA3AQ14563 771 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MYBPC3Q14896 1274 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MYLK3Q32MK0 819 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 TNFAIP8L3Q5GJ75 292 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MMAAQ8IVH4 418 aaKnown RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SAMD14Q8IZD0 417 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 TNFAIP8L1Q8WVP5 186 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ZUFSPQ96AP4 578 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 HSH2DQ96JZ2 352 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ZNF641Q96N77 438 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 TMED5Q9Y3A6 229 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 GNB5O14775 395 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 SNAP29O95721 258 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 IFNA6P05013 189 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 BCHEP06276 602 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MPIP34949 423 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 ENTPD1P49961 510 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 CLCNKAP51800 687 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 PCBP2Q15366 365 aaKnown RBP eCLIP13.64□□□□□ -0.237e-10■■■■■ 38
CPSF1-212ENST00000616140 SLC30A6Q6NXT4 461 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 UMODL1-AS1Q8N2C9 162 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 OR8H1Q8NGG4 311 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MARCH4Q9P2E8 410 aaPredicted RBP13.64□□□□□ -0.23
CPSF1-212ENST00000616140 CKLFQ9UBR5 152 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 POFUT2Q9Y2G5 429 aa13.64□□□□□ -0.23
CPSF1-212ENST00000616140 MYH7P12883 1935 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 DAPL1A0PJW8 107 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 ERI3O43414 337 aaKnown RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 JUNP05412 331 aaKnown RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 H1F0P07305 194 aaKnown RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 LRRC32Q14392 662 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 CEACAM20Q6UY09 585 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 IFNL1Q8IU54 200 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 PRSS58Q8IYP2 241 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 NXPE1Q8N323 547 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TMEM130Q8N3G9 435 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 OR6K6Q8NGW6 343 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 PIGKQ92643 395 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 NUS1Q96E22 293 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 CDADC1Q9BWV3 514 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 MRPS30Q9NP92 439 aaKnown RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TUBA8Q9NY65 449 aaPredicted RBP13.63□□□□□ -0.23
CPSF1-212ENST00000616140 TAC3Q9UHF0 121 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 PTGDR2Q9Y5Y4 395 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 C10orf71Q711Q0 1435 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 ORC5O43913 435 aa13.63□□□□□ -0.23
CPSF1-212ENST00000616140 CCR8P51685 355 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms