RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TYSND1Q2T9J0 566 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 INAVAQ3KP66 663 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 PYDC2Q56P42 97 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 RUNDC3AQ59EK9 446 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SUSD1Q6UWL2 747 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TMPRSS11AQ6ZMR5 421 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SPATC1Q76KD6 591 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 C2orf73Q8N5S3 287 aaPredicted RBP12.24□□□□□ -0.45
LIG1-221ENST00000613670 ADAMTS16Q8TE57 1224 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 C8orf48Q96LL4 319 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 FEVQ99581 238 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ACAT2Q9BWD1 397 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CRISPLD1Q9H336 500 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 BRD9Q9H8M2 597 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TIGARQ9NQ88 270 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 FLRT1Q9NZU1 646 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 MALT1Q9UDY8 824 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ERVK-11Q9UQG0 969 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 PCDHGA10Q9Y5H3 936 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CCDC182A6NF36 153 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TMEM221A6NGB7 291 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ANKDD1BA6NHY2 528 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SLC38A8A6NNN8 435 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 OR7A17O14581 309 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TNFRSF21O75509 655 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TSPAN19P0C672 248 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TNNI3P19429 210 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CYP4F8P98187 520 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 NCF4Q15080 339 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 NDUFA5Q16718 116 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CARD16Q5EG05 197 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 XKR7Q5GH72 579 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.24□□□□□ -0.45
LIG1-221ENST00000613670 UBE2UQ5VVX9 321 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 FRG2Q64ET8 278 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.24□□□□□ -0.45
LIG1-221ENST00000613670 SLC24A5Q71RS6 500 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SNX20Q7Z614 316 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ADGRG2Q8IZP9 1017 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ZNF675Q8TD23 568 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 TANKQ92844 425 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 FRG2BQ96QU4 278 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 BARD1Q99728 777 aaKnown RBP12.24□□□□□ -0.45
LIG1-221ENST00000613670 RNF38Q9H0F5 515 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 OR51E2Q9H255 320 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 OR6C75A6NL08 312 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 M0QX08 132 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 AP2A2O94973 939 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CSF2P04141 144 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 HOXC13P31276 330 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SOWAHCQ53LP3 525 aaPredicted RBP12.24□□□□□ -0.45
LIG1-221ENST00000613670 TRIQKQ629K1 86 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 BBS7Q8IWZ6 715 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 FAM217AQ8IXS0 508 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SIX5Q8N196 739 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 OR4K1Q8NGD4 311 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CSGALNACT1Q8TDX6 532 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 PHF21AQ96BD5 680 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 APIPQ96GX9 242 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 CDK5RAP1Q96SZ6 601 aaKnown RBP12.24□□□□□ -0.45
LIG1-221ENST00000613670 ACOT13Q9NPJ3 140 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 IL37Q9NZH6 218 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 SPATA7Q9P0W8 599 aa12.24□□□□□ -0.45
LIG1-221ENST00000613670 ILVBLA1L0T0 632 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 KDELR3O43731 214 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 LZTS3O60299 673 aaPredicted RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 PRPS1L1P21108 318 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 IL12RB1P42701 662 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TUFMP49411 452 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 PPP2R2BQ00005 443 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 SF3B4Q15427 424 aaKnown RBP eCLIP12.23□□□□□ -0.451e-7■■■■■ 41.2
LIG1-221ENST00000613670 KCNA10Q16322 511 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 DUOXA1Q1HG43 343 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TTC23LQ6PF05 361 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 DEF8Q6ZN54 512 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 USP51Q70EK9 711 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TRIM48Q8IWZ4 208 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 TCAIMQ8N3R3 496 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 MYEOVQ96EZ4 313 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 RAD18Q9NS91 495 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 TPST2O60704 377 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 DUSP11O75319 330 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 DNAJB5O75953 348 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 EPHA2P29317 976 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 GPC1P35052 558 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 CSKP41240 450 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 CPZQ66K79 652 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 HIST2H2AA3Q6FI13 130 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 NOXRED1Q6NXP6 359 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 SHQ1Q6PI26 577 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 TMPRSS11BQ86T26 416 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 RIMKLAQ8IXN7 391 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 C1orf52Q8N6N3 182 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 PAPD5Q8NDF8 572 aaKnown RBP12.23□□□□□ -0.45
LIG1-221ENST00000613670 FCGR1BQ92637 280 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 C1GALT1C1Q96EU7 318 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 SLC39A13Q96H72 371 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 DIRAS2Q96HU8 199 aa12.23□□□□□ -0.45
LIG1-221ENST00000613670 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms