RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RFTN2Q52LD8 501 aaPredicted RBP13.75□□□□□ -0.21
USP39-220ENST00000613444 ASRGL1Q7L266 308 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 SPATA19Q7Z5L4 167 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 AMIGO1Q86WK6 493 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 C17orf64Q86WR6 236 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 LAS2Q8IYD9 372 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 ZFPM2Q8WW38 1151 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 LCN9Q8WX39 176 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 TXLNGQ9NUQ3 528 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 POT1Q9NUX5 634 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 OR6C2Q9NZP2 312 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 TAGLN3Q9UI15 199 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 PCDHGA11Q9Y5H2 935 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 GPR45Q9Y5Y3 372 aa13.75□□□□□ -0.21
USP39-220ENST00000613444 PIPSLA2A3N6 862 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 RGS14O43566 566 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ATP5HO75947 161 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 GPX3P22352 226 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 CALB2P22676 271 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 PRPH2P23942 346 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 SHMT2P34897 504 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 DHPSP49366 369 aaPredicted RBP13.74□□□□□ -0.21
USP39-220ENST00000613444 MRPL19P49406 292 aaKnown RBP13.74□□□□□ -0.21
USP39-220ENST00000613444 MEF2AQ02078 507 aaPredicted RBP13.74□□□□□ -0.21
USP39-220ENST00000613444 PRDX1Q06830 199 aaKnown RBP13.74□□□□□ -0.21
USP39-220ENST00000613444 ELOCQ15369 112 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 NR6A1Q15406 480 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ZNF423Q2M1K9 1284 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 AP5B1Q2VPB7 878 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ICE2Q659A1 982 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 C11orf74Q86VG3 221 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ADGRF3Q8IZF5 1079 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ZNF740Q8NDX6 193 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ZNF548Q8NEK5 533 aaPredicted RBP13.74□□□□□ -0.21
USP39-220ENST00000613444 FAM46DQ8NEK8 389 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 OR4E2Q8NGC2 313 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 OR4K1Q8NGD4 311 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 ZDHHC1Q8WTX9 485 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 SH3KBP1Q96B97 665 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 TUBB6Q9BUF5 446 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 SDR39U1Q9NRG7 319 aaPredicted RBP13.74□□□□□ -0.21
USP39-220ENST00000613444 AIG1Q9NVV5 245 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 PCDHB11Q9Y5F2 797 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 FRYLO94915 3013 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 KMT2EQ8IZD2 1858 aa13.74□□□□□ -0.21
USP39-220ENST00000613444 A0A1B0GVT2 93 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 BTN3A3O00478 584 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 YY2O15391 372 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 KDM1AO60341 852 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 PRDX6P30041 224 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 CTSKP43235 329 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 HNRNPKP61978 463 aaKnown RBP eCLIP13.73□□□□□ -0.21
USP39-220ENST00000613444 EMX2Q04743 252 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 MED27Q6P2C8 311 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 POU5F2Q8N7G0 328 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 FLVCR1-AS1Q8TAF5 88 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 LMX1AQ8TE12 382 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 PPP3R2Q96LZ3 170 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 BRINP2Q9C0B6 783 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 ERVMER34-1Q9H9K5 563 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 PELI2Q9HAT8 420 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 SPASTQ9UBP0 616 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 PILRBQ9UKJ0 227 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 A0A1B0GTW7 788 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 RSL1D1O76021 490 aaKnown RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 VIPP01282 170 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 CHRM5P08912 532 aaPredicted RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 ESRRAP11474 423 aaPredicted RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 CPA2P48052 419 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 C21orf59P57076 290 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 CSTF3Q12996 717 aaKnown RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 GSTA3Q16772 222 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 KIF19Q2TAC6 998 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 SMU1Q2TAY7 513 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 BMP8AQ7Z5Y6 402 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 FUNDC1Q8IVP5 155 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 FNDC5Q8NAU1 212 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 OR9I1Q8NGQ6 314 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 HUS1BQ8NHY5 278 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 FBXO27Q8NI29 283 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 ZC3H10Q96K80 434 aaKnown RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 MTERF1Q99551 399 aaKnown RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 C1orf50Q9BV19 199 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 ACTR5Q9H9F9 607 aaPredicted RBP13.73□□□□□ -0.21
USP39-220ENST00000613444 MRGBPQ9NV56 204 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 TSC22D4Q9Y3Q8 395 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 ADAMTS9Q9P2N4 1935 aa13.73□□□□□ -0.21
USP39-220ENST00000613444 MAGEB17A8MXT2 336 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 H7BY64 318 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 AQP9O43315 295 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 PIAS2O75928 621 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 ETHE1O95571 254 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 COX4I1P13073 169 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 SLC2A4P14672 509 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 IDO1P14902 403 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 ACADVLP49748 655 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 ACTN3Q08043 901 aaPredicted RBP13.72□□□□□ -0.21
USP39-220ENST00000613444 LAPTM5Q13571 262 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 PAGE2BQ5JRK9 111 aa13.72□□□□□ -0.21
USP39-220ENST00000613444 VN1R5Q7Z5H4 357 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms