RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SLC6A14Q9UN76 642 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 RAI2Q9Y5P3 530 aa17.83■□□□□ 0.44
UPF1-210ENST00000600689 PDE4DIPQ5VU43 2346 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 HOXC11O43248 304 aaPredicted RBP17.82■□□□□ 0.44
UPF1-210ENST00000600689 IL6P05231 212 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 TGM4P49221 684 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 TTPAP49638 278 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 TRIM71Q2Q1W2 868 aaKnown RBP17.82■□□□□ 0.44
UPF1-210ENST00000600689 ARMCX4Q5H9R4 360 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 CLLU1OSQ5K130 101 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 KDM4DQ6B0I6 523 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 CAPN13Q6MZZ7 669 aaPredicted RBP17.82■□□□□ 0.44
UPF1-210ENST00000600689 SNX20Q7Z614 316 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 SELENOMQ8WWX9 145 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 CPPED1Q9BRF8 314 aaPredicted RBP17.82■□□□□ 0.44
UPF1-210ENST00000600689 ARIH1Q9Y4X5 557 aaPredicted RBP17.82■□□□□ 0.44
UPF1-210ENST00000600689 CCRL2O00421 344 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 PTHP01270 115 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 RETP07949 1114 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 JUNDP17535 347 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 OR1G1P47890 313 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 IL18R1Q13478 541 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 ZNF181Q2M3W8 571 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 MON1AQ86VX9 555 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 SPPL2AQ8TCT8 520 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 SLC39A13Q96H72 371 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 NECTIN4Q96NY8 510 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 PANX1Q96RD7 426 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 NUDT4Q9NZJ9 180 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 OGDHLQ9ULD0 1010 aa17.82■□□□□ 0.44
UPF1-210ENST00000600689 PRLP01236 227 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 CDC20Q12834 499 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 TAF10Q12962 218 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 NDUFA5Q16718 116 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 ZMAT1Q5H9K5 638 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 ZNF675Q8TD23 568 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 ZNF566Q969W8 418 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 SPATA17Q96L03 361 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 SEPT5Q99719 369 aaPredicted RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 TMEM246Q9BRR3 403 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 GPR63Q9BZJ6 419 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 PAQR5Q9NXK6 330 aaPredicted RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 CCL27Q9Y4X3 112 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 PCDHB9Q9Y5E1 797 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 EVPLLA8MZ36 301 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 SLC25A14O95258 325 aaPredicted RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 ENGP17813 658 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 CXCR2P25025 360 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 DNAJA1P31689 397 aaKnown RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 OR1E2P47887 323 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 SMARCB1Q12824 385 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 ZFP69Q49AA0 526 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 USP39Q53GS9 565 aaKnown RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 CLECL1Q8IZS7 167 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 SIX5Q8N196 739 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 CYP4Z2PQ8N1L4 340 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 LINC01599Q8WXQ3 324 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 C1orf74Q96LT6 269 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 C1QTNF3Q9BXJ4 246 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 CLMPQ9H6B4 373 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 FBXL12Q9NXK8 326 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 UBA2Q9UBT2 640 aaPredicted RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 NDRG4Q9ULP0 352 aaKnown RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 PPT2Q9UMR5 302 aa17.81■□□□□ 0.44
UPF1-210ENST00000600689 WBP11Q9Y2W2 641 aaKnown RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 DNMT3AQ9Y6K1 912 aaPredicted RBP17.81■□□□□ 0.44
UPF1-210ENST00000600689 HOXD11P31277 338 aaPredicted RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 NRIP1P48552 1158 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 TAF1AQ15573 450 aaPredicted RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 PPP2R2DQ66LE6 453 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 NADSYN1Q6IA69 706 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 DEPDC4Q8N2C3 294 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 MMP28Q9H239 520 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 TMEM184CQ9NVA4 438 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 PRSS21Q9Y6M0 314 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 WASH4PA8MWX3 477 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 H3BM21 787 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 IFRD1O00458 451 aaPredicted RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 HAT1O14929 419 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 PDYNP01213 254 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 CKBP12277 381 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 FPR1P21462 350 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 POU1F1P28069 291 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 RRM2P31350 389 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 HTR7P34969 479 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 CLCN7P51798 805 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 DEFA1P59665 94 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 DEFA3P59666 94 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 IL17RDQ8NFM7 739 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 TRIB3Q96RU7 358 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 ACPTQ9BZG2 426 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 IL1RAPQ9NPH3 570 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 SERHLQ9NQF3 203 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 RLIMQ9NVW2 624 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 HCSTQ9UBK5 93 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 SAMD4AQ9UPU9 718 aaKnown RBP17.8■□□□□ 0.44
UPF1-210ENST00000600689 BTBD3Q9Y2F9 522 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 MYO16Q9Y6X6 1858 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 ISPDA4D126 451 aa17.8■□□□□ 0.44
UPF1-210ENST00000600689 SAGE2PA6NJ88 616 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms