RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 MED16Q9Y2X0 877 aa13.55□□□□□ -0.24
LIG1-218ENST00000599322 ARGFXA6NJG6 315 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 E7ENX8 843 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 E7ESA3 106 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 ALBP02768 609 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 EZRP15311 586 aaKnown RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 CDKN2DP55273 166 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 AP1S2P56377 157 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 MRPS25P82663 173 aaKnown RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 TAP2Q03519 686 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 OCA2Q04671 838 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 NDUFA9Q16795 377 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 WHAMMP3Q1A5X7 153 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 RBM20Q5T481 1227 aaKnown RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 PRAMEF13Q5VWM6 474 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 CAPN13Q6MZZ7 669 aaPredicted RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 C8orf74Q6P047 294 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 PRMT9Q6P2P2 845 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 TRMT10BQ6PF06 316 aaKnown RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 FAM198BQ6UWH4 519 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 CAPN12Q6ZSI9 719 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 MED25Q71SY5 747 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 CCDC25Q86WR0 208 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 C17orf64Q86WR6 236 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 TMEM102Q8N9M5 508 aaPredicted RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 TEX19Q8NA77 164 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 PPFIBP2Q8ND30 876 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 FKBP10Q96AY3 582 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 ABHD17AQ96GS6 310 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 RUFY1Q96T51 708 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 PLCD4Q9BRC7 762 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 HAUS8Q9BT25 410 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 ING2Q9H160 280 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 CLMPQ9H6B4 373 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 TMEM184CQ9NVA4 438 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 TLK1Q9UKI8 766 aa13.54□□□□□ -0.24
LIG1-218ENST00000599322 NXT1Q9UKK6 140 aaKnown RBP13.54□□□□□ -0.24
LIG1-218ENST00000599322 FAM95CA0A1B0GW59 222 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 A0A1W2PPV9 198 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 OR2A25A4D2G3 310 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 KRT87PA6NCN2 255 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 HCRTR1O43613 425 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 WISP1O95388 367 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 ANXA5P08758 320 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 ENO2P09104 434 aaPredicted RBP13.53□□□□□ -0.24
LIG1-218ENST00000599322 FURINP09958 794 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 GABRB3P28472 473 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 CCL11P51671 97 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 RELAQ04206 551 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 CBLBQ13191 982 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 SLC9A5Q14940 896 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 IRAK1BP1Q5VVH5 260 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 DUPD1Q68J44 220 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 LCN10Q6JVE6 187 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 AGTRAPQ6RW13 159 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 C3orf62Q6ZUJ4 267 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 RNF44Q7L0R7 432 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 OVCH1Q7RTY7 1134 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 CSNK1A1LQ8N752 337 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 CLEC1AQ8NC01 280 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 OR2Y1Q8NGV0 311 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 NACC2Q96BF6 587 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 SLC25A23Q9BV35 468 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 YIPF2Q9BWQ6 316 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 PHACTR1Q9C0D0 580 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 ZNF304Q9HCX3 659 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 ZNF71Q9NQZ8 489 aaPredicted RBP13.53□□□□□ -0.24
LIG1-218ENST00000599322 MOCS1Q9NZB8 636 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 STOX2Q9P2F5 926 aaPredicted RBP13.53□□□□□ -0.24
LIG1-218ENST00000599322 ANAPC2Q9UJX6 822 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 PDE10AQ9Y233 779 aa13.53□□□□□ -0.24
LIG1-218ENST00000599322 FITM1A5D6W6 292 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 H3BMH7 237 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 CTSVO60911 334 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 FDXRP22570 491 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 IMPA1P29218 277 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 PGDP52209 483 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 EMP3P54852 163 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 RPS15AP62244 130 aaKnown RBP13.52□□□□□ -0.25
LIG1-218ENST00000599322 NFKB2Q00653 900 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 NAE1Q13564 534 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 IL10RAQ13651 578 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 GARNL3Q5VVW2 1013 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 ZNF385CQ66K41 422 aaPredicted RBP13.52□□□□□ -0.25
LIG1-218ENST00000599322 TCTN3Q6NUS6 607 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 FRA10AC1Q70Z53 315 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 PAQR7Q86WK9 346 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 PTRH1Q86Y79 214 aaKnown RBP13.52□□□□□ -0.25
LIG1-218ENST00000599322 CTAGE3PQ8IX95 158 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 ANKRD7Q92527 254 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 THAP11Q96EK4 314 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 PDLIM5Q96HC4 596 aaKnown RBP13.52□□□□□ -0.25
LIG1-218ENST00000599322 ZNF285Q96NJ3 590 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 FAM129AQ9BZQ8 928 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 TSPYL1Q9H0U9 437 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 RHOJQ9H4E5 214 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 WDR54Q9H977 334 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 SLC6A20Q9NP91 592 aa13.52□□□□□ -0.25
LIG1-218ENST00000599322 MTRF1LQ9UGC7 380 aaKnown RBP13.52□□□□□ -0.25
LIG1-218ENST00000599322 TLN1Q9Y490 2541 aaKnown RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms