RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 GTF2H4Q92759 462 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 APIPQ96GX9 242 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 ITCHQ96J02 903 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 APOLD1Q96LR9 279 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 OR52E6Q96RD3 313 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 PRKAB1Q9Y478 270 aa13.72□□□□□ -0.21
LIG3-205ENST00000585941 CROCCQ5TZA2 2017 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 C2CD4DB7Z1M9 353 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 COL9A1P20849 921 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 ATXN3P54252 364 aaPredicted RBP13.71□□□□□ -0.21
LIG3-205ENST00000585941 CTBSQ01459 385 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 RABL3Q5HYI8 236 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 PRAMEF14Q5SWL7 426 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 THEMIS2Q5TEJ8 643 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 PRAMEF13Q5VWM6 474 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 CAPRIN2Q6IMN6 1127 aaKnown RBP13.71□□□□□ -0.21
LIG3-205ENST00000585941 NXPE4Q6UWF7 544 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 RIMKLAQ8IXN7 391 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 KRTCAP2Q8N6L1 136 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 OR5AR1Q8NGP9 310 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 MTERF1Q99551 399 aaKnown RBP13.71□□□□□ -0.21
LIG3-205ENST00000585941 APOOQ9BUR5 198 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 KCNH6Q9H252 994 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 KCNK12Q9HB15 430 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 ARMC1Q9NVT9 282 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 CIDEBQ9UHD4 219 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 ADGRE2Q9UHX3 823 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 RIMS3Q9UJD0 308 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 PPT2Q9UMR5 302 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 MAN2B2Q9Y2E5 1009 aa13.71□□□□□ -0.21
LIG3-205ENST00000585941 PCYT1BQ9Y5K3 369 aaPredicted RBP13.71□□□□□ -0.21
LIG3-205ENST00000585941 PRR23AA6NEV1 266 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 GPIP06744 558 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 UMPSP11172 480 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 PCNAP12004 261 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 IGFALSP35858 605 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 GRIA3P42263 894 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 PIK3CBP42338 1070 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 SMAD4Q13485 552 aaKnown RBP13.7□□□□□ -0.22
LIG3-205ENST00000585941 DDX39BQ13838 428 aaKnown RBP13.7□□□□□ -0.22
LIG3-205ENST00000585941 CYP2A13Q16696 494 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 CYP2R1Q6VVX0 501 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 SYT12Q8IV01 421 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 KRT78Q8N1N4 520 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 SPDYE1Q8NFV5 336 aaPredicted RBP13.7□□□□□ -0.22
LIG3-205ENST00000585941 HUS1BQ8NHY5 278 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 KLK6Q92876 244 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 C11orf24Q96F05 449 aaPredicted RBP13.7□□□□□ -0.22
LIG3-205ENST00000585941 SCARF2Q96GP6 870 aaPredicted RBP13.7□□□□□ -0.22
LIG3-205ENST00000585941 TSSK3Q96PN8 268 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 HHIPQ96QV1 700 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 RAB11FIP5Q9BXF6 653 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 PITHD1Q9GZP4 211 aaPredicted RBP13.7□□□□□ -0.22
LIG3-205ENST00000585941 VCXQ9H320 206 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 SIRT5Q9NXA8 310 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 SLAMF8Q9P0V8 285 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 MAGEL2Q9UJ55 1249 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 PCDHB3Q9Y5E6 796 aa13.7□□□□□ -0.22
LIG3-205ENST00000585941 A0A096LPI6 279 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 MAGEB17A8MXT2 336 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 ARPC2O15144 300 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CAPNS1P04632 268 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CEACAM5P06731 702 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 ATP6V1B2P21281 511 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 IL10P22301 178 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 IGFBP4P22692 258 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CXCR2P25025 360 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PSMA4P25789 261 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 PEX2P28328 305 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CLCNKAP51800 687 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 KIAA1024LP59773 190 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TSTA3Q13630 321 aaPredicted RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 SLBPQ14493 270 aaKnown RBP eCLIP13.69□□□□□ -0.22
LIG3-205ENST00000585941 MTX3Q5HYI7 312 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 LRIF1Q5T3J3 769 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 GALNT18Q6P9A2 607 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CHST15Q7LFX5 561 aaPredicted RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 GPR180Q86V85 440 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TRIM69Q86WT6 500 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PDSS2Q86YH6 399 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 KBTBD2Q8IY47 623 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 SMPDL3AQ92484 453 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 POP5Q969H6 163 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 MRGPRX1Q96LB2 322 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PPM1MQ96MI6 270 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TMEM74Q96NL1 305 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 BTBD9Q96Q07 612 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 BTBD1Q9H0C5 482 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 COPS7BQ9H9Q2 264 aaPredicted RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 PELI2Q9HAT8 420 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 CCM2LQ9NUG4 571 aaPredicted RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 GEMIN8Q9NWZ8 242 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 LIMD1Q9UGP4 676 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 TDRKHQ9Y2W6 561 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 DTNAQ9Y4J8 743 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 PIPSLA2A3N6 862 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 HNRNPRO43390 633 aaKnown RBP13.69□□□□□ -0.22
LIG3-205ENST00000585941 KDM1AO60341 852 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 GMNNO75496 209 aa13.69□□□□□ -0.22
LIG3-205ENST00000585941 ACP5P13686 325 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms