RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 WDR35Q9P2L0 1181 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 HDAC6Q9UBN7 1215 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CNOT8Q9UFF9 292 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 FBXW2Q9UKT8 454 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TRAF3IP3Q9Y228 551 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 SIRT4Q9Y6E7 314 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 A0A1W2PPW3 197 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CLEC18AA5D8T8 446 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 K7ERI5 159 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 O00370 1275 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 SCAMP1O15126 338 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CETN3O15182 167 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 YKT6O15498 198 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TXNL1O43396 289 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 EXTL3O43909 919 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 PRAMEF2O60811 474 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 PRAMEF11O60813 436 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TBX10O75333 385 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 RSL1D1O76021 490 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 PAPSS2O95340 614 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 GJB5O95377 273 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC2A3P11169 496 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 EPB41P11171 864 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 AOC1P19801 751 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 MSNP26038 577 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 GJB2P29033 226 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 RDXP35241 583 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 GPR12P47775 334 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 GPC3P51654 580 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 FOXG1P55316 489 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 SNU13P55769 128 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 HAND2P61296 217 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CLPPQ16740 277 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 PNLIPRP3Q17RR3 467 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 USP41Q3LFD5 358 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CCDC40Q4G0X9 1142 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 RESP18Q5W5W9 173 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 C11orf87Q6NUJ2 197 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CLEC18BQ6UXF7 455 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 HAPLN4Q86UW8 402 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 VPS36Q86VN1 386 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TMEM173Q86WV6 379 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TMC8Q8IU68 726 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 RYBPQ8N488 228 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TMEM217Q8N7C4 229 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 EXD3Q8N9H8 876 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CLEC18CQ8NCF0 446 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 STKLD1Q8NE28 680 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 WFIKKN2Q8TEU8 576 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 C2CD4CQ8TF44 421 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CTNNBL1Q8WYA6 563 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF689Q96CS4 500 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 RRNAD1Q96FB5 475 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 WDR24Q96S15 920 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 KXD1Q9BQD3 176 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 SLC2A11Q9BYW1 496 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 EBF3Q9H4W6 596 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 RPF1Q9H9Y2 349 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TRPV4Q9HBA0 871 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 GDAP2Q9NXN4 497 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 ELOVL5Q9NYP7 299 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 GDE1Q9NZC3 331 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 DKK3Q9UBP4 350 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 TTC7AQ9ULT0 858 aaPredicted RBP1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 SNX7Q9UNH6 387 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 ZNF148Q9UQR1 794 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 CCL27Q9Y4X3 112 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 DOCK3Q8IZD9 2030 aa1.88□□□□□ -2.11
SMCHD1-211ENST00000584897 LCTP09848 1927 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 A0A1B0GUA9 196 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 C1orf226A1L170 272 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 KDM4EB2RXH2 506 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 AP3B1O00203 1094 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 UBE2CO00762 179 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 CYTH3O43739 400 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 GOSR1O95249 250 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PGLSO95336 258 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 GUCA1CO95843 209 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PAEPP09466 180 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 KRT5P13647 590 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MMP9P14780 707 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ARSAP15289 507 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ST6GAL1P15907 406 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 IL11P20809 199 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 AZGP1P25311 298 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 GNL1P36915 607 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MTNR1AP48039 350 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 CLK1P49759 484 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PPP5CP53041 499 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 NME5P56597 212 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 CD81P60033 236 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 STX1BP61266 288 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PSMC6P62333 389 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 MAD2L1Q13257 205 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 OLIG2Q13516 323 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 DNASE1L3Q13609 305 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 PDGFRLQ15198 375 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 RPS6KA1Q15418 735 aa1.87□□□□□ -2.11
SMCHD1-211ENST00000584897 ME3Q16798 604 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms