RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 CCDC138Q96M89 665 aa19.54■□□□□ 0.72
SS18-224ENST00000584083 PARVBQ9HBI1 364 aa19.54■□□□□ 0.72
SS18-224ENST00000584083 PDE10AQ9Y233 779 aa19.54■□□□□ 0.72
SS18-224ENST00000584083 UTP11Q9Y3A2 253 aaKnown RBP19.54■□□□□ 0.72
SS18-224ENST00000584083 TNRC6AQ8NDV7 1962 aaKnown RBP19.53■□□□□ 0.72
SS18-224ENST00000584083 FITM1A5D6W6 292 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 PABPN1LA6NDY0 278 aaKnown RBP19.53■□□□□ 0.72
SS18-224ENST00000584083 H0YGG7 62 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 SLC16A5O15375 505 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 SUV39H1O43463 412 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 NR1D1P20393 614 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 SAT1P21673 171 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 PGGT1BP53609 377 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 ARF3P61204 181 aaPredicted RBP19.53■□□□□ 0.72
SS18-224ENST00000584083 SP140Q13342 867 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 SSPNQ14714 243 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 STRA8Q7Z7C7 330 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 PAQR7Q86WK9 346 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 METTL27Q8N6F8 245 aaPredicted RBP19.53■□□□□ 0.72
SS18-224ENST00000584083 OLFM1Q99784 485 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 SAYSD1Q9NPB0 183 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 CCDC177Q9NQR7 707 aaPredicted RBP19.53■□□□□ 0.72
SS18-224ENST00000584083 SLC22A11Q9NSA0 550 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 MOCS1Q9NZB8 636 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 STOX2Q9P2F5 926 aaPredicted RBP19.53■□□□□ 0.72
SS18-224ENST00000584083 PSAT1Q9Y617 370 aa19.53■□□□□ 0.72
SS18-224ENST00000584083 IGKV1-8A0A0C4DH67 115 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 HIST1H2AGP0C0S8 130 aaPredicted RBP19.52■□□□□ 0.72
SS18-224ENST00000584083 HIST1H2ADP20671 130 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 FDXRP22570 491 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 ATP1A4Q13733 1029 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 DUPD1Q68J44 220 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 ZNF425Q6IV72 752 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 TCTN3Q6NUS6 607 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 MRPL14Q6P1L8 145 aaKnown RBP19.52■□□□□ 0.72
SS18-224ENST00000584083 MBOAT1Q6ZNC8 495 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 OVCH1Q7RTY7 1134 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 LRRC56Q8IYG6 542 aaPredicted RBP19.52■□□□□ 0.72
SS18-224ENST00000584083 OR2Y1Q8NGV0 311 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 ZDHHC19Q8WVZ1 309 aaPredicted RBP19.52■□□□□ 0.72
SS18-224ENST00000584083 ALKBH8Q96BT7 664 aaKnown RBP19.52■□□□□ 0.72
SS18-224ENST00000584083 PTERQ96BW5 349 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 HIST1H2AHQ96KK5 128 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 HIST1H2AJQ99878 128 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 H2AFJQ9BTM1 129 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 RAB17Q9H0T7 212 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 ENAMQ9NRM1 1142 aa19.52■□□□□ 0.72
SS18-224ENST00000584083 HELZ2Q9BYK8 2649 aaKnown RBP19.51■□□□□ 0.71
SS18-224ENST00000584083 PYCARD-AS1I3L0S3 204 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 K7EM74 188 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 PEX12O00623 359 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 EIF3HO15372 352 aaKnown RBP eCLIP19.51■□□□□ 0.71
SS18-224ENST00000584083 CNOT3O75175 753 aaKnown RBP19.51■□□□□ 0.71
SS18-224ENST00000584083 EZRP15311 586 aaKnown RBP19.51■□□□□ 0.71
SS18-224ENST00000584083 ITGAXP20702 1163 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 OR1D4P47884 311 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 RRADP55042 308 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 FOXL2P58012 376 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 TBPL1P62380 186 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 CBLBQ13191 982 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 PRAMEF13Q5VWM6 474 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 AGTRAPQ6RW13 159 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 ASB18Q6ZVZ8 466 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 MED25Q71SY5 747 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 SLC26A11Q86WA9 606 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 ZC3HC1Q86WB0 502 aaKnown RBP19.51■□□□□ 0.71
SS18-224ENST00000584083 RERGQ96A58 199 aaPredicted RBP19.51■□□□□ 0.71
SS18-224ENST00000584083 FKBP10Q96AY3 582 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 CABS1Q96KC9 395 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 C16orf45Q96MC5 204 aaPredicted RBP19.51■□□□□ 0.71
SS18-224ENST00000584083 IP6K3Q96PC2 410 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 SLC25A23Q9BV35 468 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 TRIM54Q9BYV2 358 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 PCBD2Q9H0N5 130 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 ATG10Q9H0Y0 220 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 NSMCE4AQ9NXX6 385 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 GRHL1Q9NZI5 618 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 MAU2Q9Y6X3 613 aa19.51■□□□□ 0.71
SS18-224ENST00000584083 H7BY64 318 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 TSPAN12O95859 305 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 SSTR1P30872 391 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 PLTPP55058 493 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 CKAP4Q07065 602 aaKnown RBP19.5■□□□□ 0.71
SS18-224ENST00000584083 NAE1Q13564 534 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 PHKG1Q16816 387 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 MUM1Q2TAK8 710 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 MRGPREQ86SM8 312 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 DTWD1Q8N5C7 304 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 CSNK1A1LQ8N752 337 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 TMEM102Q8N9M5 508 aaPredicted RBP19.5■□□□□ 0.71
SS18-224ENST00000584083 COL26A1Q96A83 441 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 PRAP1Q96NZ9 151 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 TRIM4Q9C037 500 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 CUEDC1Q9NWM3 386 aaPredicted RBP19.5■□□□□ 0.71
SS18-224ENST00000584083 ARL15Q9NXU5 204 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 ANAPC2Q9UJX6 822 aa19.5■□□□□ 0.71
SS18-224ENST00000584083 FAM95CA0A1B0GW59 222 aa19.49■□□□□ 0.71
SS18-224ENST00000584083 A6NL46 340 aa19.49■□□□□ 0.71
SS18-224ENST00000584083 HAT1O14929 419 aa19.49■□□□□ 0.71
SS18-224ENST00000584083 PIAS1O75925 651 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms