RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	FSHR	P23945	695 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PTBP1	P26599	531 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MAPK3	P27361	379 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RPS9	P46781	194 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CLK3	P49761	638 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	KCNK10	P57789	538 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RNF4	P78317	190 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ITGAD	Q13349	1161 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SLC8B1	Q6J4K2	584 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	NANOGP8	Q6NSW7	305 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SYVN1	Q86TM6	617 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SCML4	Q8N228	414 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SIDT2	Q8NBJ9	832 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GLB1L3	Q8NCI6	653 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MDGA1	Q8NFP4	955 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OR4K2	Q8NGD2	314 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OR10Z1	Q8NGY1	313 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ENKUR	Q8TC29	256 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PTCD2	Q8WV60	388 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FIG4	Q92562	907 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BAD	Q92934	168 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TMEM125	Q96AQ2	219 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CENPN	Q96H22	339 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FAR2	Q96K12	515 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RNF38	Q9H0F5	515 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ING2	Q9H160	280 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	NANOG	Q9H9S0	305 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	REV1	Q9UBZ9	1251 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	INVS	Q9Y283	1065 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	AP3M1	Q9Y2T2	418 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	OAS3	Q9Y6K5	1087 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	REV3L	O60673	3130 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	LOC285095	A0A1B0GVY8	99 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CCDC154	A6NI56	674 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	COCH	O43405	550 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TBC1D4	O60343	1298 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ECI2	O75521	394 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CAPN1	P07384	714 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CNP	P09543	421 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZNF37A	P17032	561 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FDXR	P22570	491 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	DHPS	P49366	369 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	HTR6	P50406	440 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SEMG2	Q02383	582 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TXNDC8	Q6A555	127 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PSAPL1	Q6NUJ1	521 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	JMJD6	Q6NYC1	403 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MSANTD2	Q6P1R3	559 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	C8orf82	Q6P1X6	216 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GALNT18	Q6P9A2	607 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	RAB44	Q7Z6P3	723 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PHYKPL	Q8IUZ5	450 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TRPV3	Q8NET8	790 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CLHC1	Q8NHS4	586 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CCDC126	Q96EE4	140 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TSPAN17	Q96FV3	270 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BTN2A3P	Q96KV6	586 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	DACH2	Q96NX9	599 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	WDR12	Q9GZL7	423 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SP140L	Q9H930	580 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SMPD3	Q9NY59	655 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MAPRE3	Q9UPY8	281 aa		11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SPTBN5	Q9NRC6	3674 aa	Known RBP	11.29	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	FFAR3	O14843	346 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	GPR42	O15529	346 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PRAMEF12	O95522	483 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CYBB	P04839	570 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MYF6	P23409	242 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	HRH2	P25021	359 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TRHR	P34981	398 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CA5A	P35218	305 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	BMX	P51813	675 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CDC20	Q12834	499 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ADRM1	Q16186	407 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PERM1	Q5SV97	790 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	KIAA0408	Q6ZU52	694 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SPRED2	Q7Z698	418 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	DSG4	Q86SJ6	1040 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CAMKK1	Q8N5S9	505 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SLC15A4	Q8N697	577 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZNF248	Q8NDW4	579 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MTFMT	Q96DP5	389 aa	Known RBP	11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	MYRFL	Q96LU7	910 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PLGRKT	Q9HBL7	147 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ARMC1	Q9NVT9	282 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	CPNE7	Q9UBL6	633 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	DNMT3L	Q9UJW3	386 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ANAPC2	Q9UJX6	822 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	SPATA2	Q9UM82	520 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	POLH	Q9Y253	713 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	YIPF1	Q9Y548	306 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	KANSL1L	A0AUZ9	987 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PMS2P1	A4D2B8	440 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	ZNF840P	A6NDX5	716 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	WASH4P	A8MWX3	477 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	B3GALT4	O96024	378 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	PLG	P00747	810 aa	Predicted RBP	11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	TACR2	P21452	398 aa		11.28	□□□□□ -0.6
CDK5RAP3-231	ENST00000584063	AGXT	P21549	392 aa		11.28	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms