RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 BARD1Q99728 777 aaKnown RBP19.54■□□□□ 0.72
SHMT1-209ENST00000582653 ILKAPQ9H0C8 392 aaPredicted RBP19.54■□□□□ 0.72
SHMT1-209ENST00000582653 CCDC68Q9H2F9 335 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 MRPS30Q9NP92 439 aaKnown RBP19.54■□□□□ 0.72
SHMT1-209ENST00000582653 FAM114A2Q9NRY5 505 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 ABCF3Q9NUQ8 709 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 TAC3Q9UHF0 121 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 FBXO5Q9UKT4 447 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 SNX12Q9UMY4 172 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 HS3ST3B1Q9Y662 390 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 COPG1Q9Y678 874 aaKnown RBP19.54■□□□□ 0.72
SHMT1-209ENST00000582653 FAM169AQ9Y6X4 670 aa19.54■□□□□ 0.72
SHMT1-209ENST00000582653 IGKV1-8A0A0C4DH67 115 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 BANF1O75531 89 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 DDAH2O95865 285 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 SLC16A8O95907 504 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 SYF2O95926 243 aaKnown RBP19.53■□□□□ 0.72
SHMT1-209ENST00000582653 ITGA3P26006 1051 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 FNTAP49354 379 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 PNLIPRP1P54315 467 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 ESPL1Q14674 2120 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 TTLL9Q3SXZ7 439 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 RNASEH2BQ5TBB1 312 aaKnown RBP19.53■□□□□ 0.72
SHMT1-209ENST00000582653 IGFL2Q6UWQ7 119 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 NEK10Q6ZWH5 1172 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 GRK7Q8WTQ7 553 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 ZNF480Q8WV37 535 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 ASB11Q8WXH4 323 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 KCNJ9Q92806 393 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 VPS50Q96JG6 964 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 ZFYVE21Q9BQ24 234 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 PLCD4Q9BRC7 762 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 MESP1Q9BRJ9 268 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 KCNF1Q9H3M0 494 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 GRPEL1Q9HAV7 217 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 ZNF304Q9HCX3 659 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 SEMA3GQ9NS98 782 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 IARS2Q9NSE4 1012 aaKnown RBP19.53■□□□□ 0.72
SHMT1-209ENST00000582653 FBXL4Q9UKA2 621 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 DHRS7Q9Y394 339 aa19.53■□□□□ 0.72
SHMT1-209ENST00000582653 RP1L1Q8IWN7 2480 aaPredicted RBP19.52■□□□□ 0.72
SHMT1-209ENST00000582653 WIPF3A6NGB9 483 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 H0YGG7 62 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 GLRBP48167 497 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 ARF3P61204 181 aaPredicted RBP19.52■□□□□ 0.72
SHMT1-209ENST00000582653 ARHGAP19Q14CB8 494 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 PPP1R7Q15435 360 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 PRMT9Q6P2P2 845 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 CPNE9Q8IYJ1 553 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.52■□□□□ 0.72
SHMT1-209ENST00000582653 CD200R1Q8TD46 325 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 INPP5DQ92835 1189 aa19.52■□□□□ 0.72
SHMT1-209ENST00000582653 DDX47Q9H0S4 455 aaKnown RBP19.52■□□□□ 0.72
SHMT1-209ENST00000582653 GOLGA6L10A0A0M3HER8 536 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 E7ENX8 843 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 GFYI3L273 518 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 ZSCAN12O43309 604 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 MPC1LP0DKB6 136 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 ERVK-10P10266 1014 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 TAP2Q03519 686 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 PRDX1Q06830 199 aaKnown RBP19.51■□□□□ 0.71
SHMT1-209ENST00000582653 NAA25Q14CX7 972 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 NR6A1Q15406 480 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 PRTGQ2VWP7 1150 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 AGAP7PQ5VUJ5 663 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 ICE2Q659A1 982 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 PIWIL4Q7Z3Z4 852 aaKnown RBP19.51■□□□□ 0.71
SHMT1-209ENST00000582653 CUZD1Q86UP6 607 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 KCNMB4Q86W47 210 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 PAQR7Q86WK9 346 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 LMNTD2Q8IXW0 634 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 PRSS58Q8IYP2 241 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 CALML6Q8TD86 181 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 C10orf90Q96M02 699 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 AGAP4Q96P64 663 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 NDNQ99608 321 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 AARSD1Q9BTE6 412 aaKnown RBP19.51■□□□□ 0.71
SHMT1-209ENST00000582653 KLHL42Q9P2K6 505 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 PCDHGA10Q9Y5H3 936 aa19.51■□□□□ 0.71
SHMT1-209ENST00000582653 SMAPO00193 183 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 ZBTB14O43829 449 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 RNF224P0DH78 156 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 HSD17B2P37059 387 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 CARSP49589 748 aaKnown RBP19.5■□□□□ 0.71
SHMT1-209ENST00000582653 EMP3P54852 163 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 OCA2Q04671 838 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 DHX9Q08211 1270 aaKnown RBP19.5■□□□□ 0.71
SHMT1-209ENST00000582653 HKDC1Q2TB90 917 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 TUBB8Q3ZCM7 444 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 MSS51Q4VC12 460 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 IRAK1BP1Q5VVH5 260 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 ZNF425Q6IV72 752 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 PARP9Q8IXQ6 854 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 LRRC56Q8IYG6 542 aaPredicted RBP19.5■□□□□ 0.71
SHMT1-209ENST00000582653 FBXO15Q8NCQ5 510 aaPredicted RBP19.5■□□□□ 0.71
SHMT1-209ENST00000582653 OR11G2Q8NGC1 345 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 STT3BQ8TCJ2 826 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 PPP4R1Q8TF05 950 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 CABS1Q96KC9 395 aa19.5■□□□□ 0.71
SHMT1-209ENST00000582653 LHPPQ9H008 270 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms