RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	SYF2	O95926	243 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	HIST1H2AD	P20671	130 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	MMP11	P24347	488 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	MCM3	P25205	808 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	GABRB3	P28472	473 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	IMPA1	P29218	277 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	CCL11	P51671	97 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	AP1S2	P56377	157 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	VSX2	P58304	361 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	ETF1	P62495	437 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	TIAL1	Q01085	375 aa	Known RBP eCLIP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	MGAT5	Q09328	741 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	CALCOCO2	Q13137	446 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	FAM45BP	Q6NSW5	357 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	SUSD1	Q6UWL2	747 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	CYS1	Q717R9	158 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	PIWIL4	Q7Z3Z4	852 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	PTRH1	Q86Y79	214 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	LRRC56	Q8IYG6	542 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	SPATA4	Q8NEY3	305 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	FAM45A	Q8TCE6	357 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	EEF1AKMT1	Q8WVE0	214 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	RERG	Q96A58	199 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	THAP11	Q96EK4	314 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	HIST1H2AH	Q96KK5	128 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	KRT12	Q99456	494 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	HIST1H2AJ	Q99878	128 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	ERP44	Q9BS26	406 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	TRIM51	Q9BSJ1	452 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	H2AFJ	Q9BTM1	129 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	ACAT2	Q9BWD1	397 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	TRIM54	Q9BYV2	358 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	PHACTR1	Q9C0D0	580 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	PLAC1	Q9HBJ0	212 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	ZNF304	Q9HCX3	659 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	SEMA3G	Q9NS98	782 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	MOCS1	Q9NZB8	636 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	ZFAT	Q9P243	1243 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	TAC3	Q9UHF0	121 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	TSR3	Q9UJK0	312 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	VWA7	Q9Y334	891 aa		12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	SETX	Q7Z333	2677 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	HEATR5B	Q9P2D3	2071 aa		12.02	□□□□□ -0.48
CDK5RAP3-222	ENST00000581708	IGLV3-12	A0A075B6K2	115 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	KCNE1B	A0A087WTH5	132 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	IGKV1-8	A0A0C4DH67	115 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708		A0A0J9YVX5	310 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	VSTM2B	A6NLU5	285 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708		H0YGG7	62 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	AGPS	O00116	658 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	DPM1	O60762	260 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	DNAJB5	O75953	348 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	IPO13	O94829	963 aa	Known RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ALPP	P05187	535 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ENO2	P09104	434 aa	Predicted RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FDXR	P22570	491 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	VARS	P26640	1264 aa	Known RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CASQ1	P31415	396 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	OTX2	P32243	289 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CDKN2D	P55273	166 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ARF3	P61204	181 aa	Predicted RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CAV1	Q03135	178 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TLE1	Q04724	770 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PDAP1	Q13442	181 aa	Known RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ATP1A4	Q13733	1029 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FAM53B	Q14153	422 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NKG7	Q16617	165 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	DCAF10	Q5QP82	559 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	THEMIS2	Q5TEJ8	643 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CPZ	Q66K79	652 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FRMPD2B	Q6IN97	320 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PAQR3	Q6TCH7	311 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ATL1	Q8WXF7	558 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	OR2A5	Q96R48	311 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NDN	Q99608	321 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	SMAD5	Q99717	465 aa	Known RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	EPN3	Q9H201	632 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	GPR83	Q9NYM4	423 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	STOX2	Q9P2F5	926 aa	Predicted RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	ZNF282	Q9UDV7	671 aa	Predicted RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	NOVA2	Q9UNW9	492 aa	Known RBP	12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CHMP2B	Q9UQN3	213 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	PDE10A	Q9Y233	779 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	MED13	Q9UHV7	2174 aa		12.02	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	LOC105369274	A0A096LPK9	316 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	LOC102723532	A0A0G2JNH3	316 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	KRT87P	A6NCN2	255 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FANCG	O15287	622 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CNOT3	O75175	753 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	BANF1	O75531	89 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	TSPAN12	O95859	305 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	EIF2S1	P05198	315 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	UMOD	P07911	640 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	CYC1	P08574	325 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	GSTA2	P09210	222 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RPL21	P46778	160 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	RPS15A	P62244	130 aa	Known RBP	12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	FOXK1	P85037	733 aa		12.01	□□□□□ -0.49
CDK5RAP3-222	ENST00000581708	OCA2	Q04671	838 aa		12.01	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms