RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 GTDC1Q4AE62 458 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF767PQ75MW2 155 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 TMEM179BQ7Z7N9 219 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 LUZP2Q86TE4 346 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 GPSM1Q86YR5 675 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 EFHBQ8N7U6 833 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 L3HYPDHQ96EM0 354 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 PYURFQ96I23 114 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 CLSTN3Q9BQT9 956 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 AIFM2Q9BRQ8 373 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF451Q9Y4E5 1061 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 MIA3Q5JRA6 1907 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 M0QZQ0 153 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 TNFRSF10BO14763 440 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 AP2A2O94973 939 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 HLA-DPA1P20036 260 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 WEE1P30291 646 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 S100A3P33764 101 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 PNPLA4P41247 253 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 DAOAP59103 153 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 DUSP7Q16829 419 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 KANK2Q63ZY3 851 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 MZT2BQ6NZ67 158 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 CCDC149Q6ZUS6 474 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 EIF3MQ7L2H7 374 aaKnown RBP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ZFAND4Q86XD8 727 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 TMEM132CQ8N3T6 1108 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 OR52J3Q8NH60 311 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 GPR151Q8TDV0 419 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 MTFMTQ96DP5 389 aaKnown RBP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 TTPALQ9BTX7 342 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 APOL5Q9BWW9 433 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ASPNQ9BXN1 380 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 GPR83Q9NYM4 423 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 HCN4Q9Y3Q4 1203 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 RWDD3Q9Y3V2 267 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 LTBP2Q14767 1821 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 OR2A25A4D2G3 310 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 H3BUI4 141 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 CAPN5O15484 640 aaPredicted RBP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF623O75123 536 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF780AO75290 641 aaPredicted RBP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 VNN2O95498 520 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 FGF4P08620 206 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 PRIM2P49643 509 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ABATP80404 500 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 DGKKQ5KSL6 1271 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 SPANXN4Q5MJ08 99 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 LHX8Q68G74 356 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 PAQR3Q6TCH7 311 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 CYHR1Q6ZMK1 362 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 CYP4Z2PQ8N1L4 340 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 GALNT11Q8NCW6 608 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 PROKR1Q8TCW9 393 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 PGAP3Q96FM1 320 aaPredicted RBP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 KLHL5Q96PQ7 755 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 COLEC11Q9BWP8 271 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 C1orf109Q9NX04 203 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 OSER1Q9NX31 292 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 SPATA2Q9UM82 520 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 SAMD4AQ9UPU9 718 aaKnown RBP9.32□□□□□ -0.92
CCDC40-212ENST00000574799 KCTD3Q9Y597 815 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 KCNE2Q9Y6J6 123 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 ANAPC1Q9H1A4 1944 aa9.32□□□□□ -0.92
CCDC40-212ENST00000574799 CDC7O00311 574 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 ECI2O75521 394 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 PDGFAP04085 211 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 FABP3P05413 133 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SERPINF2P08697 491 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 NAT2P11245 290 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 M6PRP20645 277 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 ETV3P41162 512 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 BRCC3P46736 316 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 ST3GAL4Q11206 333 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 NKG7Q16617 165 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 PM20D1Q6GTS8 502 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 Q6ZPB1 254 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 TSPYL5Q86VY4 417 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CILP2Q8IUL8 1156 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 AKAP1Q92667 903 aaKnown RBP eCLIP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 TP53INP1Q96A56 240 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 ZNF583Q96ND8 569 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 MCMBPQ9BTE3 642 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 AP5M1Q9H0R1 490 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 PPIL3Q9H2H8 161 aaKnown RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CRISPLD1Q9H336 500 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CATSPERBQ9H7T0 1116 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CARS2Q9HA77 564 aaKnown RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 IL1RAPQ9NPH3 570 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 MARCH4Q9P2E8 410 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SPASTQ9UBP0 616 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 TMPRSS11EQ9UL52 423 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 ING4Q9UNL4 249 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 TRAV19A0A0A6YYK7 116 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 A0A0U1RQF3 1178 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 SLC16A6O15403 523 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 LRATO95237 230 aa9.31□□□□□ -0.92
CCDC40-212ENST00000574799 CPSF4O95639 269 aaKnown RBP9.31□□□□□ -0.92
CCDC40-212ENST00000574799 F9P00740 461 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms