RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 WBP4O75554 376 aaKnown RBP15.18■□□□□ 0.02
NUP88-207ENST00000573584 SEMG1P04279 462 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 SPAM1P38567 509 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 PPP5CP53041 499 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 SEMG2Q02383 582 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 ELAVL2Q12926 359 aaKnown RBP15.18■□□□□ 0.02
NUP88-207ENST00000573584 CRHR2Q13324 411 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 CDKN3Q16667 212 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 NOXRED1Q6NXP6 359 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 UBE2R2Q712K3 238 aaPredicted RBP15.18■□□□□ 0.02
NUP88-207ENST00000573584 PGBD3Q8N328 593 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 MCFD2Q8NI22 146 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 SLC35B4Q969S0 331 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 CASD1Q96PB1 797 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 KLF16Q9BXK1 252 aaPredicted RBP15.18■□□□□ 0.02
NUP88-207ENST00000573584 KLHL25Q9H0H3 589 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 OSGIN1Q9UJX0 560 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 PCDHB7Q9Y5E2 793 aa15.18■□□□□ 0.02
NUP88-207ENST00000573584 CLDN24A6NM45 220 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 EPN2O95208 641 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CBSLP0DN79 551 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 HMGA1P17096 107 aaKnown RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 AMD1P17707 334 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 PRPS1L1P21108 318 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CBSP35520 551 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 TGFBR2P37173 567 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 NSG1P42857 185 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CLK1P49759 484 aaKnown RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 FADDQ13158 208 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CDH18Q13634 790 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 SYT16Q17RD7 645 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 MSANTD1Q6ZTZ1 278 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 EIF3MQ7L2H7 374 aaKnown RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 LRRC70Q7Z2Q7 622 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 HHIPQ96QV1 700 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 SIRT5Q9NXA8 310 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 SCHIP1Q9P0W5 487 aaPredicted RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP15.17■□□□□ 0.02
NUP88-207ENST00000573584 MAGEB17A8MXT2 336 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 UPK3BL1B0FP48 263 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 UPK3BL2E5RIL1 263 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 HIST1H2AGP0C0S8 130 aaPredicted RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 GPX2P18283 190 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 HIST1H2ADP20671 130 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 EFNA1P20827 205 aaPredicted RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 PRPH2P23942 346 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CCR7P32248 378 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 OR1D2P34982 312 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 PPP3CCP48454 512 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 PTCHD3Q3KNS1 767 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 GGTA1PQ4G0N0 100 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 PDE12Q6L8Q7 609 aaKnown RBP15.17■□□□□ 0.02
NUP88-207ENST00000573584 ERICH5Q6P6B1 374 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CBLL1Q75N03 491 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 TSPAN33Q86UF1 283 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 PTOV1Q86YD1 416 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 WFDC5Q8TCV5 224 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 TPD52L3Q96J77 140 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 HIST1H2AHQ96KK5 128 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 HIST1H2AJQ99878 128 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 H2AFJQ9BTM1 129 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 ZNF229Q9UJW7 825 aa15.17■□□□□ 0.02
NUP88-207ENST00000573584 CPSF4O95639 269 aaKnown RBP15.16■□□□□ 0.02
NUP88-207ENST00000573584 NTRK1P04629 796 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 HSPA14Q0VDF9 509 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 MTAPQ13126 283 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 CAMK2GQ13555 558 aaPredicted RBP15.16■□□□□ 0.02
NUP88-207ENST00000573584 BOP1Q14137 746 aaKnown RBP15.16■□□□□ 0.02
NUP88-207ENST00000573584 CDKL4Q5MAI5 379 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 NEK5Q6P3R8 708 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 TTC23LQ6PF05 361 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 SYT12Q8IV01 421 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 ENTHD1Q8IYW4 607 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 RNF175Q8N4F7 328 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 GPR26Q8NDV2 337 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 ITPAQ9BY32 194 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 DCSTAMPQ9H295 470 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 NMRK2Q9NPI5 230 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 ITGB1BP2Q9UKP3 347 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 ERVK-11Q9UQG0 969 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 FRMPD3Q5JV73 1810 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 GALTP07902 379 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 COL6A1P12109 1028 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 HOXD12P35452 270 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 ALDH7A1P49419 539 aaKnown RBP15.16■□□□□ 0.02
NUP88-207ENST00000573584 ABRQ12979 859 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 TAF12Q16514 161 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 FRG2Q64ET8 278 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 FAHD1Q6P587 224 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 P3H2Q8IVL5 708 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 CSGALNACT1Q8TDX6 532 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 APH1BQ8WW43 257 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 DNASE1L2Q92874 299 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 UPF1Q92900 1129 aaKnown RBP eCLIP15.16■□□□□ 0.02
NUP88-207ENST00000573584 SLC38A4Q969I6 547 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 FRG2BQ96QU4 278 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 ZBTB20Q9HC78 741 aaPredicted RBP15.16■□□□□ 0.02
NUP88-207ENST00000573584 SLC22A14Q9Y267 594 aa15.16■□□□□ 0.02
NUP88-207ENST00000573584 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP15.16■□□□□ 0.02
NUP88-207ENST00000573584 MYO1DO94832 1006 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms