RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 LARP4Q71RC2 724 aaKnown RBP eCLIP29.47■■■□□ 2.31
CTCF-203ENST00000566078 ADGRF3Q8IZF5 1079 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 ARL14Q8N4G2 192 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 OR2A1Q8NGT9 310 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 SELENOMQ8WWX9 145 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 PELI2Q9HAT8 420 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 RIC8BQ9NVN3 520 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 GEMIN8Q9NWZ8 242 aaKnown RBP29.47■■■□□ 2.31
CTCF-203ENST00000566078 CSNK1G3Q9Y6M4 447 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 CABIN1Q9Y6J0 2220 aa29.47■■■□□ 2.31
CTCF-203ENST00000566078 ISM1B1AKI9 464 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 BTN3A3O00478 584 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 PRICKLE3O43900 615 aaPredicted RBP29.46■■■□□ 2.31
CTCF-203ENST00000566078 VPS4BO75351 444 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 PDYNP01213 254 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 MEF2AQ02078 507 aaPredicted RBP29.46■■■□□ 2.31
CTCF-203ENST00000566078 PAGE2BQ5JRK9 111 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 SPDYAQ5MJ70 313 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 FRG2Q64ET8 278 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 TMEM198Q66K66 360 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 ZNF761Q86XN6 746 aaPredicted RBP29.46■■■□□ 2.31
CTCF-203ENST00000566078 FRG2BQ96QU4 278 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 VPS13AQ96RL7 3174 aa29.46■■■□□ 2.31
CTCF-203ENST00000566078 H0YIV9 168 aa29.45■■■□□ 2.31
CTCF-203ENST00000566078 CHCHD2P9Q5T1J5 151 aaPredicted RBP29.45■■■□□ 2.31
CTCF-203ENST00000566078 METTL21CQ5VZV1 264 aa29.45■■■□□ 2.31
CTCF-203ENST00000566078 SLC25A45Q8N413 288 aa29.45■■■□□ 2.31
CTCF-203ENST00000566078 SPNS1Q9H2V7 528 aa29.45■■■□□ 2.31
CTCF-203ENST00000566078 G3BP2Q9UN86 482 aaKnown RBP29.45■■■□□ 2.31
CTCF-203ENST00000566078 MDC1Q14676 2089 aaKnown RBP29.45■■■□□ 2.31
CTCF-203ENST00000566078 RALGAPA1Q6GYQ0 2036 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 PIPSLA2A3N6 862 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 PATE3B3GLJ2 98 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 EPHA8P29322 1005 aaPredicted RBP29.45■■■□□ 2.3
CTCF-203ENST00000566078 FASLGP48023 281 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 NEK2P51955 445 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 PRDX1Q06830 199 aaKnown RBP29.45■■■□□ 2.3
CTCF-203ENST00000566078 LAPTM5Q13571 262 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 CLNKQ7Z7G1 428 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 OR10G6Q8NH81 332 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 MARK4Q96L34 752 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 CATSPER2Q96P56 530 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 CAPN10Q9HC96 672 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 ARMCX1Q9P291 453 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 PCDHGA11Q9Y5H2 935 aa29.45■■■□□ 2.3
CTCF-203ENST00000566078 A0A1B0GTQ1 180 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 FAM221BA6H8Z2 402 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 OR6C74A6NCV1 312 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 SLC28A1O00337 649 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 CCNDBP1O95273 360 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 UBAP2LQ14157 1087 aaKnown RBP29.44■■■□□ 2.3
CTCF-203ENST00000566078 HIST2H2ACQ16777 129 aaPredicted RBP29.44■■■□□ 2.3
CTCF-203ENST00000566078 HLA-BQ31612 363 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 HIST2H2AA3Q6FI13 130 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 MED27Q6P2C8 311 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 OGFOD3Q6PK18 319 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 C17orf82Q86X59 251 aaPredicted RBP29.44■■■□□ 2.3
CTCF-203ENST00000566078 KYQ8NBH2 561 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 WDR20Q8TBZ3 569 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 MRPS30Q9NP92 439 aaKnown RBP29.44■■■□□ 2.3
CTCF-203ENST00000566078 SAR1AQ9NR31 198 aa29.44■■■□□ 2.3
CTCF-203ENST00000566078 RGS14O43566 566 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 PCNAP12004 261 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 CCR8P51685 355 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 BIRC2Q13490 618 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 KIR2DS3Q14952 304 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 NR6A1Q15406 480 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 SF1Q15637 639 aaKnown RBP29.43■■■□□ 2.3
CTCF-203ENST00000566078 IMPG1Q17R60 797 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 C14orf28Q4W4Y0 310 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 TRIM61Q5EBN2 209 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 C6orf132Q5T0Z8 1188 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 Q6ZSR9 355 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 TRIM46Q7Z4K8 759 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 FAM20CQ8IXL6 584 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 ABHD11Q8NFV4 315 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 OR2L3Q8NG85 312 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 REPS1Q96D71 796 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 TBC1D10AQ9BXI6 508 aa29.43■■■□□ 2.3
CTCF-203ENST00000566078 PRR33A8MZF0 331 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 H7BY64 318 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 PPM1DO15297 605 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 PEX11AO75192 247 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 LBPP18428 481 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 POLR2CP19387 275 aaPredicted RBP29.42■■■□□ 2.3
CTCF-203ENST00000566078 CMPK1P30085 196 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 ABATP80404 500 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 DDX39BQ13838 428 aaKnown RBP29.42■■■□□ 2.3
CTCF-203ENST00000566078 GALNTL6Q49A17 601 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 FAM129CQ86XR2 697 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 GPR156Q8NFN8 814 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 OR7G3Q8NG95 312 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 SLC22A18Q96BI1 424 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 PRAP1Q96NZ9 151 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 SLC6A14Q9UN76 642 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 R4GN57 208 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 ARID1BQ8NFD5 2236 aaPredicted RBP29.42■■■□□ 2.3
CTCF-203ENST00000566078 GOLGA4Q13439 2230 aaKnown RBP29.42■■■□□ 2.3
CTCF-203ENST00000566078 GSAPA4D1B5 854 aa29.42■■■□□ 2.3
CTCF-203ENST00000566078 UBDO15205 165 aa29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms