RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CHRM3P20309 590 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 HSD17B2P37059 387 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 RELAQ04206 551 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 ZNF169Q14929 603 aaPredicted RBP16.31■□□□□ 0.2
CLN3-216ENST00000565316 ZNF425Q6IV72 752 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 NEPROQ6NW34 567 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 ISLR2Q6UXK2 745 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 CENPUQ71F23 418 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 PAQR7Q86WK9 346 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 CILP2Q8IUL8 1156 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 PRELID2Q8N945 189 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 MVB12AQ96EY5 273 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 ACAT2Q9BWD1 397 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 EPS8L2Q9H6S3 715 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 FAM114A2Q9NRY5 505 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 STOX2Q9P2F5 926 aaPredicted RBP16.31■□□□□ 0.2
CLN3-216ENST00000565316 KLHL42Q9P2K6 505 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 VPS9D1Q9Y2B5 631 aa16.31■□□□□ 0.2
CLN3-216ENST00000565316 AVILO75366 819 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 KLHL18O94889 574 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 ERVK-10P10266 1014 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 FBLP22087 321 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 CLCN7P51798 805 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 PRDX1Q06830 199 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 MFAP5Q13361 173 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 DSG2Q14126 1118 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 TLR1Q15399 786 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 KLHL38Q2WGJ6 581 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 VWA2Q5GFL6 755 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 SUSD1Q6UWL2 747 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 NEK10Q6ZWH5 1172 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 LAPTM4BQ86VI4 370 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 CAND1Q86VP6 1230 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 ARHGEF39Q8N4T4 335 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 FBXO15Q8NCQ5 510 aaPredicted RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 GRHL3Q8TE85 626 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 FAM136AQ96C01 138 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 PKP4Q99569 1192 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 ZNF160Q9HCG1 818 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 MRPS30Q9NP92 439 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 INTS10Q9NVR2 710 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 TSR3Q9UJK0 312 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 CDC14AQ9UNH5 594 aa16.3■□□□□ 0.2
CLN3-216ENST00000565316 MDC1Q14676 2089 aaKnown RBP16.3■□□□□ 0.2
CLN3-216ENST00000565316 FAM237BA0A1B0GVD1 139 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 MAP2K7O14733 419 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 CEP104O60308 925 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 VPS26AO75436 327 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 CATP04040 527 aaKnown RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 PAMP19021 973 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 RPA3P35244 121 aaPredicted RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 SOX11P35716 441 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 SLC26A3P40879 764 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 PNLIPRP1P54315 467 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 SARNPP82979 210 aaKnown RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 KCTD19Q17RG1 926 aaPredicted RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 GARNL3Q5VVW2 1013 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 ICE2Q659A1 982 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 RPUSD3Q6P087 351 aaKnown RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 NDUFAF7Q7L592 441 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 REXO1L1PQ8IX06 675 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 KBTBD2Q8IY47 623 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 PRSS58Q8IYP2 241 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 CSNK1A1LQ8N752 337 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 FAR1Q8WVX9 515 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 PSMF1Q92530 271 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 C8orf44Q96CB5 159 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 CABS1Q96KC9 395 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 OR2A5Q96R48 311 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 TRIM56Q9BRZ2 755 aaKnown RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 TGIF2Q9GZN2 237 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 LZTFL1Q9NQ48 299 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 RUVBL1Q9Y265 456 aaKnown RBP16.29■□□□□ 0.2
CLN3-216ENST00000565316 MED16Q9Y2X0 877 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 CREBBPQ92793 2442 aa16.29■□□□□ 0.2
CLN3-216ENST00000565316 MAGEB16A2A368 324 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 ZNF839A8K0R7 811 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 IDSB3KWA1 339 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 E7ENX8 843 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 PCDH17O14917 1159 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 PRPF4O43172 522 aaKnown RBP eCLIP16.28■□□□□ 0.2
CLN3-216ENST00000565316 USP1O94782 785 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 SLC16A8O95907 504 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 CCDC175P0C221 793 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 COX6A1P12074 109 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 MLNP12872 115 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 EDN3P14138 238 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 EZRP15311 586 aaKnown RBP16.28■□□□□ 0.2
CLN3-216ENST00000565316 FDXRP22570 491 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 COL8A1P27658 744 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 DCTP40126 519 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 TAP2Q03519 686 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 CDC16Q13042 620 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 GPS1Q13098 491 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 TRIP13Q15645 432 aaPredicted RBP16.28■□□□□ 0.2
CLN3-216ENST00000565316 ANKRD22Q5VYY1 191 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 LINC00696Q6ZRV3 163 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 LRRC56Q8IYG6 542 aaPredicted RBP16.28■□□□□ 0.2
CLN3-216ENST00000565316 AMER3Q8N944 861 aa16.28■□□□□ 0.2
CLN3-216ENST00000565316 TRIM58Q8NG06 486 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms