RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 LRFN5Q96NI6 719 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PDGFDQ9GZP0 370 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 MED16Q9Y2X0 877 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CLIC3O95833 236 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SERPIND1P05546 499 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 RENBPP51606 427 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 BRINP3Q76B58 766 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TMEM200AQ86VY9 491 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 MAP4K3Q8IVH8 894 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ACBD6Q9BR61 282 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 DHRS4Q9BTZ2 278 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SLC39A8Q9C0K1 460 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 BTBD1Q9H0C5 482 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 FNIP2Q9P278 1114 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GMPR2Q9P2T1 348 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 SLC25A13Q9UJS0 675 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 MINPP1Q9UNW1 487 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 A0A0D9SG52 128 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 A0A1W2PQ09 198 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 RBMS1P29558 406 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 PER3P56645 1201 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 DCST1Q5T197 706 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 HIST2H3PS2Q5TEC6 136 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SERPINA13PQ6UXR4 307 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ZNF454Q8N9F8 522 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PCDH19Q8TAB3 1148 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ZFP3Q96NJ6 502 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ELAC1Q9H777 363 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 POPDC2Q9HBU9 364 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 A0A0G2JMP0 313 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SEC14L5O43304 696 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 NARSO43776 548 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 ATP6AP2O75787 350 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 IL1AP01583 271 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CSF1RP07333 972 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ZNF26P17031 533 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 HTR3AP46098 478 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TGM4P49221 684 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CDC42EP1Q00587 391 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SLC6A3Q01959 620 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CLCQ05315 142 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GRIN2CQ14957 1233 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 UQCC3Q6UW78 93 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GTPBP8Q8N3Z3 284 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 OR4M2Q8NGB6 313 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CORO2AQ92828 525 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 HPDLQ96IR7 371 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 YIPF4Q9BSR8 244 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TRIM2Q9C040 744 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.11□□□□□ -1.43
CLK3-212ENST00000563418 ZNF490Q9ULM2 529 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 SLC27A5Q9Y2P5 690 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PCDHGB7Q9Y5F8 929 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 SCN4AP35499 1836 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 RGS9O75916 674 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 PRPS2P11908 318 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ARF5P84085 180 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PFKPQ01813 784 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TNFAIP1Q13829 316 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CXorf57Q6NSI4 855 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 CHST15Q7LFX5 561 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 THEM5Q8N1Q8 247 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 OR10A6Q8NH74 314 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CNIH3Q8TBE1 160 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CD300LFQ8TDQ1 290 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ING5Q8WYH8 240 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PITHD1Q9GZP4 211 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 TUT1Q9H6E5 874 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 WDR26Q9H7D7 661 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CYB5R1Q9UHQ9 305 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PCDHB5Q9Y5E4 795 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 CACNG2Q9Y698 323 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 MYO10Q9HD67 2058 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 LRRC72A6NJI9 287 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 FGF10O15520 208 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 MRPS10P82664 201 aaKnown RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 AANATQ16613 207 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 UGT3A2Q3SY77 523 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ZRANB3Q5FWF4 1079 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 AADACL4Q5VUY2 407 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 RNF219Q5W0B1 726 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 CD276Q5ZPR3 534 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GSG1LQ6UXU4 331 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TM9SF4Q92544 642 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 OR2M4Q96R27 311 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 DUSP16Q9BY84 665 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 FAM126AQ9BYI3 521 aaPredicted RBP6.11□□□□□ -1.43
CLK3-212ENST00000563418 SLC25A32Q9H2D1 315 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ICKQ9UPZ9 632 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 A8MX80 341 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 TLR4O00206 839 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PIAS1O75925 651 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 AMHP03971 560 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GKN3PP0CG01 181 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ETV4P43268 484 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 ELP2Q6IA86 826 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 NRROSQ86YC3 692 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 GALNT13Q8IUC8 556 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 FBXO27Q8NI29 283 aa6.11□□□□□ -1.43
CLK3-212ENST00000563418 PABPC5Q96DU9 382 aaKnown RBP6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms